<List of Series> <Series: SSH5-B> <Clone: SSH533> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Clone SSH533
Dictyostelium discoideum cDNA Project Home
Size: 0.9k
3' sequence: TS980129
5' sequence: TS981207
Whole insert?: *
Accession #:
Remarks: *
Sequence SSH533
AATATATTTT ACACTTTTTT TTTTATTTTT TTTATATATT AGAAAAATTA
AAGATAAATA AAGATGGATG GAGTTAAAGA ATGGTTCAAT TCAATACCCC
CAGTTTCAAG ATACATGTTT GCAATATTTT TAGGTATCCC AGTTTTAGCG
GCAATGCATT TAATTAGTTT CAATTATTTA TATTTAGATT TTACATTCAC
TTTTAAACAT TTCCACTTAT GGAGATTAAT AACCGCTCCT TGTATTATTT
CAA------- ---ATCAATA TACAACTAGA TTAGAGAGTT TAAATTATGC
AGGAAAATCA GATGATTATT TATTTTGTAT AATTTTTATT TCAATTTGTA
ATATTATATT TGGACTTATC TTTGAATATT ATTTCTTAGG TACAATGACT
ATTATGTCAT TGATTTACAT TTACTCAAGA ATGAATCCAA CTGGTACAAG
TAATTTCTAT GGATTCTTTT CATTCAAAAC CATTTATTTA CCATGGGTAT
TTTTAGTAGC ACATTTCCTT CAAACTGGTC ATCCACCATA TAGCGATTTC
TTGGCAATCG TATCTGGTCA TATCTTCTTT TATTTGACTG ATATCTATCC
AAGAGCTAAT GGTGTACCAG CTTTAATCAA AACTCCAAAA TTCATTACAA
ACATCTTTAA TAAAGGTGAC AGAAATCCAA ATAATGTTCG TAGAGATCCA
AGAACTGGTA GACCAATTCA AGAAGGTGGT TATAATTGGG GTCAAGGTCA
TGCACTTGGT TAATTAAAAA TTTTAATAAT TTTAAAAATT AAAAAATAAT
AATAATAATA ATAAAAAAA
Translated Amino Acid Sequence SSH533
<All Frames>
nifytfffiffiy*kn*r*IKMDGVKEWFNSIPPVSRYMFAIFLGIPVLAAMHLISFNYL
YLDFTFTFKHFHLWRLITAPCIIS---
---QYTTRLESLNYAGKSDDYLFCIIFISICNIIFGLIFEYYFLGTMTIMSLIYIYSRMN
PTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGV
PALIKTPKFITNIFNKGDRNPNNVRRDPRTGRPIQEGGYNWGQGHALG*lkiliilkikk
******k
Homology SSH533 vs CSM-cDNA
<more CSM info>
Sequences producing significant alignments: (bits) Value
SSH533 (SSH533Q) /CSM/SS/SSH5-B/SSH533Q.Seq.d/ 741 0.0
SSG502 (SSG502Q) /CSM/SS/SSG5-A/SSG502Q.Seq.d/ 741 0.0
SSB294 (SSB294Q) /CSM/SS/SSB2-D/SSB294Q.Seq.d/ 741 0.0
FC-IC0973 (FC-IC0973Q) /CSM/FC-IC/FC-IC0973Q.Seq.d/ 337 2e-91
FC-IC0287 (FC-IC0287Q) /CSM/FC-IC/FC-IC0287Q.Seq.d/ 337 2e-91
FC-IC0285 (FC-IC0285Q) /CSM/FC-IC/FC-IC0285Q.Seq.d/ 337 2e-91
FC-IC0283 (FC-IC0283Q) /CSM/FC-IC/FC-IC0283Q.Seq.d/ 331 1e-89
CFG292 (CFG292Q) /CSM/CF/CFG2-D/CFG292Q.Seq.d/ 38 0.21
CFI454 (CFI454Q) /CSM/CF/CFI4-C/CFI454Q.Seq.d/ 36 0.81
VSE783 (VSE783Q) /CSM/VS/VSE7-D/VSE783Q.Seq.d/ 34 3.2
Homology SSH533 vs DNA
<more DNA info>
Sequences producing significant alignments: (bits) Value N
(C90072) Dictyostelium discoideum slug cDNA, clone SSG502. 743 0.0 3
(AU037081) Dictyostelium discoideum slug cDNA, clone SSB294. 743 0.0 2
(AU038298) Dictyostelium discoideum slug cDNA, clone SSH533. 743 0.0 2
(AU073553) Dictyostelium discoideum slug cDNA, clone SSH533. 410 e-112 2
(AU272020) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271483) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271482) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271481) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271478) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 331 3e-86 1
(AM448900) Vitis vinifera contig VV78X098299.1, whole genome... 48 0.60 1
Homology SSH533 vs Protein
<more Protein info>
Sequences producing significant alignments: (bits) Value
EF070554_1(EF070554|pid:none) Maconellicoccus hirsutus clone WHM... 90 5e-20
CP000593_248(CP000593|pid:none) Ostreococcus lucimarinus CCE9901... 76 6e-19
DQ311157_1(DQ311157|pid:none) Bombyx mori Der1-like domain famil... 67 5e-17
(Q71SS4) RecName: Full=Derlin-1; AltName: Full=Degradation in en... 64 7e-17
BC045413_1(BC045413|pid:none) Danio rerio Der1-like domain famil... 65 9e-17
AB172201_1(AB172201|pid:none) Macaca fascicularis brain cDNA clo... 64 2e-16
AJ719425_1(AJ719425|pid:none) Gallus gallus mRNA for hypothetica... 62 3e-16
(Q99J56) RecName: Full=Derlin-1; AltName: Full=Degradation in en... 64 3e-16
FN357454_5(FN357454|pid:none) Schistosoma mansoni genome sequenc... 69 4e-16
FR824067_48(FR824067|pid:none) Albugo laibachii Nc14, genomic co... 65 6e-16
Homology SSH533 vs Genome
<more Genome info>
<List of Series> <Series: SSH5-B> <Clone: SSH533> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Project Home