Homology SSH533 vs DNA
Query= SSH533 (SSH533Q) /CSM/SS/SSH5-B/SSH533Q.Seq.d/
(819 letters)
Database: ddbj_B
120,034,097 sequences; 115,169,689,543 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C90072) Dictyostelium discoideum slug cDNA, clone SSG502. 743 0.0 3
(AU037081) Dictyostelium discoideum slug cDNA, clone SSB294. 743 0.0 2
(AU038298) Dictyostelium discoideum slug cDNA, clone SSH533. 743 0.0 2
(AU073553) Dictyostelium discoideum slug cDNA, clone SSH533. 410 e-112 2
(AU272020) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271483) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271482) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271481) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 337 5e-88 1
(AU271478) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 331 3e-86 1
(AM448900) Vitis vinifera contig VV78X098299.1, whole genome... 48 0.60 1
(AC170965) Bos taurus clone CH240-260M12, WORKING DRAFT SEQU... 48 0.60 1
(EJ004742) 1091138195501 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.60 1
(BX927413) Zebrafish DNA sequence from clone DKEY-29D8 in li... 46 0.69 2
(FH202461) CHO_OF3091xe24r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 1.6 2
(AJ517314) Ciona intestinalis complete mitochondrial genome. 38 1.7 4
(AP007994) Lotus japonicus genomic DNA, chromosome 1, clone:... 36 1.7 5
(CZ362647) ZMMBF0140L04f ZMMBF Zea mays genomic clone ZMMBF0... 36 1.8 2
(CU457724) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.8 6
(AF082555) HIV-1 isolate THSC97 from Thailand, envelope glyc... 46 2.4 1
(AC207683) Zea mays chromosome 10 clone CH201-523K3; ZMMBBc0... 46 2.4 1
(AC202948) Zea mays chromosome 10 clone CH201-293J1; ZMMBBc0... 46 2.4 1
(AC200527) Gallus gallus chromosome 1 clone CH261-137K10, **... 46 2.4 1
(ER343666) 1092344364548 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.4 1
(EJ052389) 1095456004776 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.4 1
(CG167441) PUJEL77TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.4 1
(EY809785) CR05-C3-702-101-B05-CT.F Mandarin fruit, developm... 46 2.4 1
(AC240756) Mustela putorius furo clone CH237-111I13, WORKING... 40 3.9 4
(AC240092) Brassica oleracea clone BOT01-75A01, WORKING DRAF... 44 4.4 3
(AM430411) Vitis vinifera contig VV78X257284.4, whole genome... 40 5.5 2
(GP777067) Sequence 12464 from patent US 7625699. 38 6.2 5
(FU037879) GENETIC POLYMORPHISMS ASSOCIATED WITH STENOSIS, M... 38 6.2 5
(FB596741) Sequence 12464 from Patent WO2004081186. 38 6.2 5
(BQ278009) AGENCOURT_7061622 NIH_MGC_109 Homo sapiens cDNA c... 40 7.8 2
(AM467015) Vitis vinifera contig VV78X096949.5, whole genome... 40 8.2 2
(CU302326) Zebrafish DNA sequence from clone CH211-143F7. 44 9.4 1
(AF025759) HIV-1 isolate SFMHS16.5 from San Francisco, envel... 44 9.4 1
(AC021642) Mus musculus chromosome 10 clone RP23-113O5, con... 44 9.4 1
(AP005419) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.4 1
(AM476374) Vitis vinifera contig VV78X262772.2, whole genome... 44 9.4 1
(AM475050) Vitis vinifera contig VV79X006231.2, whole genome... 44 9.4 1
(AM443674) Vitis vinifera, whole genome shotgun sequence, co... 44 9.4 1
(AF499727) Cucumis melo BAC clone PIT92-60K17, complete sequ... 44 9.4 1
(AC159872) Medicago truncatula clone mth2-29k12, complete se... 44 9.4 1
(EA699772) Sequence 78651 from patent US 7365185. 44 9.4 1
(EA670319) Sequence 49198 from patent US 7365185. 44 9.4 1
(DD010736) Diagnosis of known genetic Parameters within the ... 44 9.4 1
(AX344574) Sequence 25 from Patent WO0200932. 44 9.4 1
(FV536161) Modified Microbial Nucleic Acid. 44 9.4 1
(FV536160) Modified Microbial Nucleic Acid. 44 9.4 1
(FV536155) Modified Microbial Nucleic Acid. 44 9.4 1
(FV536154) Modified Microbial Nucleic Acid. 44 9.4 1
(AC011797) Homo sapiens, clone RP11-17L5, complete sequence. 44 9.4 1
(AC159350) Bos taurus clone CH240-25P11, WORKING DRAFT SEQUE... 44 9.4 1
(AC135531) Rattus norvegicus clone CH230-347K17, WORKING DRA... 44 9.4 1
(AC109968) Rattus norvegicus clone CH230-320M8, WORKING DRAF... 44 9.4 1
(FP101959) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.4 1
(CU633163) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.4 1
(AC222434) Bos taurus clone CH240-418B4, WORKING DRAFT SEQUE... 44 9.4 1
(AC202578) Medicago truncatula clone mth2-179j23, WORKING DR... 44 9.4 1
(AZ131472) OSJNBb0106N19f CUGI Rice BAC Library (EcoRI) Oryz... 44 9.4 1
(FT014260) Rattus norvegicus DNA, BAC clone: RNB2-021E18, 5'... 44 9.4 1
(FI933939) PP_LBa0028-A02.R PP_LBa Prunus persica genomic 3'... 44 9.4 1
(FI930820) PP_LBa0061-B09.R PP_LBa Prunus persica genomic 3'... 44 9.4 1
(FH038479) CHO_OF3294xi13f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.4 1
(EK342747) 1095467068335 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.4 1
(CU007367) Equus caballus GSS, BAC clone CH241-76F4, SP6 end... 44 9.4 1
(CT486712) A BAC library has been constructed from cultivar ... 44 9.4 1
(CT157571) Sus scrofa genomic clone CH242-217D3, genomic sur... 44 9.4 1
(CC942659) BOIEB91TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 44 9.4 1
(BZ464206) BONAS40TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 9.4 1
(BZ033270) oei88f05.b1 B.oleracea002 Brassica oleracea genom... 44 9.4 1
(BZ033258) oei88c12.b1 B.oleracea002 Brassica oleracea genom... 44 9.4 1
(EG760638) EST_ssal_sjb_8980 ssalsjb mixed_tissue Salmo sala... 44 9.4 1
(CF009980) QBJ24h11.pg QBJ Zea mays cDNA clone QBJ24h11, mRN... 44 9.4 1
(BU571469) AGENCOURT_10372626 NIH_MGC_144 Mus musculus cDNA ... 44 9.4 1
(CP001390) Geobacter sp. FRC-32, complete genome. 44 9.4 1
>(C90072) Dictyostelium discoideum slug cDNA, clone SSG502.
Length = 640
Score = 743 bits (375), Expect(3) = 0.0
Identities = 375/375 (100%)
Strand = Plus / Plus
Query: 385 cttaggtacaatgactattatgtcattgatttacatttactcaagaatgaatccaactgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cttaggtacaatgactattatgtcattgatttacatttactcaagaatgaatccaactgg 271
Query: 445 tacaagtaatttctatggattcttttcattcaaaaccatttatttaccatgggtattttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tacaagtaatttctatggattcttttcattcaaaaccatttatttaccatgggtattttt 331
Query: 505 agtagcacatttccttcaaactggtcatccaccatatagcgatttcttggcaatcgtatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agtagcacatttccttcaaactggtcatccaccatatagcgatttcttggcaatcgtatc 391
Query: 565 tggtcatatcttcttttatttgactgatatctatccaagagctaatggtgtaccagcttt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtcatatcttcttttatttgactgatatctatccaagagctaatggtgtaccagcttt 451
Query: 625 aatcaaaactccaaaattcattacaaacatctttaataaaggtgacagaaatccaaataa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aatcaaaactccaaaattcattacaaacatctttaataaaggtgacagaaatccaaataa 511
Query: 685 tgttcgtagagatccaagaactggtagaccaattcaagaaggtggttataattggggtca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgttcgtagagatccaagaactggtagaccaattcaagaaggtggttataattggggtca 571
Query: 745 aggtcatgcacttgg 759
|||||||||||||||
Sbjct: 572 aggtcatgcacttgg 586
Score = 101 bits (51), Expect(3) = 0.0
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 203 ttaaacatttccacttatggagattaataaccgctccttgtattatttcaa 253
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaaacatttccacttatggagattaataaccgctccttgtattatttcaa 51
Score = 101 bits (51), Expect(3) = 0.0
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 264 atcaatatacaactagattagagagtttaaattatgcaggaaaatcagatg 314
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atcaatatacaactagattagagagtttaaattatgcaggaaaatcagatg 141
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 120034097
Number of Hits to DB: 1,009,661,215
Number of extensions: 60779060
Number of successful extensions: 6458881
Number of sequences better than 10.0: 78
Length of query: 819
Length of database: 115,169,689,543
Length adjustment: 24
Effective length of query: 795
Effective length of database: 112,288,871,215
Effective search space: 89269652615925
Effective search space used: 89269652615925
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home