Dictyostelium discoideum cDNA Clone SSH454

Size:		0.9k
3' sequence:	TS980202
5' sequence:	*
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSH454

---------- GAACATCCAG CTCGTTCAAC ATTACCAACT GAATTTGCAG
TTAATGAATG GCGTGAAAGT TTTAAAAAGG CCGCTCCATT ACAATCTTCT
CTTGCTGCAG TTTCTGGTAT CGCTTCGTTG CTTACTTTTG GCTCCATTGC
AAAGGCATCC TGCAAGACAA TCAACAAAGT AATCGTCAAA GCCACAGAAG
ATTCAGTTCG TCATTGTTGC CAATGTAATG GTTTAGGTTG GTTGCTAAGT
GGTGGTTTAA TGCTTTCCAT TATTCCATTC ACTTTATTAG CCATTATGCC
AGTTAATAAG AAATTACAAT CCAAAGAACT TGATACCTTT GCTGATGATA
CTCGTCAATT ATTAGCTCAA TGGGGTGAAT TACATTCAGT TCGTTCAGTT
CTTTCACTCT CTGCGGTTGC AATTATGGGT TACAAAATCT TTAGACACTC
CCATTTGTTA ATTAAATCTT AAAAACATGT TATCATTAAG ATGAAATTAC
TTTCATAATC ATTACCAATT TAAATTTTAA AATGATATTT TATAAAATAA
AAAATAAAAT AAAATAATAT ATATAATTAC AAAAATTACA AATAGAAAAT
AAAA

Translated Amino Acid Sequence SSH454

---HPARSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVI
VKATEDSVRHCCQCNGLGWLLSGGLMLSIIPFTLLAIMPVNKKLQSKELDTFADDTRQLL
AQWGELHSVRSVLSLSAVAIMGYKIFRHSHLLIKS*khviikmklls*slpi*ilk*yfi
k*kik*nniynyknyk*kik

Homology SSH454 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSC823 (VSC823Q) /CSM/VS/VSC8-A/VSC823Q.Seq.d/                       1001   0.0
SSI513 (SSI513Q) /CSM/SS/SSI5-A/SSI513Q.Seq.d/                       1001   0.0
SSH454 (SSH454Q) /CSM/SS/SSH4-C/SSH454Q.Seq.d/                       1001   0.0
SSF379 (SSF379Q) /CSM/SS/SSF3-D/SSF379Q.Seq.d/                       1001   0.0
SSE766 (SSE766Q) /CSM/SS/SSE7-C/SSE766Q.Seq.d/                       1001   0.0
SSI247 (SSI247Q) /CSM/SS/SSI2-B/SSI247Q.Seq.d/                        993   0.0
SSM454 (SSM454Q) /CSM/SS/SSM4-C/SSM454Q.Seq.d/                        979   0.0
SSM687 (SSM687Q) /CSM/SS/SSM6-D/SSM687Q.Seq.d/                        969   0.0
CHN810 (CHN810Q) /CSM/CH/CHN8-A/CHN810Q.Seq.d/                        920   0.0
SSC649 (SSC649Q) /CSM/SS/SSC6-C/SSC649Q.Seq.d/                        916   0.0

Homology SSH454 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...  1001   0.0    1
CC874781|CC874781.1 NDL.130G15.SP6 Notre Dame Liverpool Aede...    36   0.18   3
AC115659|AC115659.5 Rattus norvegicus clone CH230-361G14, WO...    46   0.57   1
AC118884|AC118884.4 Rattus norvegicus clone CH230-481K21, WO...    46   0.57   1
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) co...    42   1.5    7
AC008331|AC008331.7 Drosophila melanogaster, chromosome 2L, ...    42   1.9    5
AC006455|AC006455.2 Homo sapiens PAC clone RP5-905H7 from 7,...    44   2.3    1
AC110977|AC110977.5 Rattus norvegicus clone CH230-167N24, WO...    44   2.3    1
AC127700|AC127700.2 Homo sapiens PAC clone RP5-1012J16 from ...    44   2.3    1
AC122133|AC122133.4 Homo sapiens BAC clone RP11-220H4 from 7...    44   2.3    1

Homology SSH454 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso...   241   1e-62
CP001389_2024(CP001389|pid:none) Sinorhizobium fredii NGR234, co...    55   2e-06
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c...    54   7e-06
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    48   4e-04
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2...    44   0.007
CP002083_3353(CP002083|pid:none) Hyphomicrobium denitrificans AT...    42   0.021
CP002157_1684(CP002157|pid:none) Maribacter sp. HTCC2170, comple...    37   0.67
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2...    37   0.67
FP103042_2008(FP103042|pid:none) Methylobacterium extorquens DM4...    35   2.5
CP002869_3950(CP002869|pid:none) Paenibacillus mucilaginosus KNP...    35   3.3

Homology SSH454 vs Genome