<List of Series> <Series: SSG3-B> <Clone: SSG340> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Clone SSG340

Dictyostelium discoideum cDNA Project Home
Size:		1.0k
3' sequence:	TM980320
5' sequence:	TM981020
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSG340

GTCCACAAAC ACCAGTACCA TGGGGAACAT TCAATGACAA TGACGAAATC
GAAGTCTACT ATATGCAAGC ACCAGTTTTC GAAGCAGTTT TTGGAAATTT
CTTTGGTAAG TTGGGTGGAT ATCATTCAGC AATTGGTTTC TATGACCTTA
CAACTGGTTT AAATTATACA GCAGAATATG ATGCTTTCTT TGAAGTAGGA
AATGGTACAT TACCAAATAT CATAAATGTC GATGGTAAAG ATGAACTTTT
ATGGTGTAAT GCTGGTATCC TTTGTACTGT TCCATACATT AATGAAACTT
ATTGGGATAA AAACATCTAT TCAACTGCTT CAAAAACTTA TATGGGAACA
ATTAATGGTA CTCAATTAAA TCAATATATC GAATGGATGC AACAATATAA
TATTTCAAAT CCAGTATACC AAACATGGGA CGTCTGGAAC AATTATGGTC
AAGATTTGTT TGTTCCATCA ACAACATGTG ATGATTTCAC TCAACAATCA
ATCGAACATT TAGGTAGTAT TGGTATTAAT TATAATTGTT CAACAGTTTT
CAAGAGAGAT TACATTAATC TTTTCACTGA AAAACCACAA CCAATCGATT
TCACAGAACA TTATGATGAT ATCTTTAAAT TCTATGAAGC TGTATTAGAA
ATTAA----- -----TTTTG GAAATGGCAA TTTTATTCAT TTCAATTAGA
TTATTTTAAA ATTAGATTAT TTTAAATTAA ATTGGTTTTA AATAAAAACT
AAAAACAAAA TTAATAAAAA AAAAATATCT TTTTTTTTTA ATTTTTTTCA
AACTGTTTTT GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAA

Translated Amino Acid Sequence SSG340

<All Frames> 
PQTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYD
AFFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGT
QLNQYIEWMQQYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYNCS
TVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEI---

---FWKWQFYSFQLDYFKIRLF*iklvlnkn*kqn**kknifff*ffsncf*kkkkkkkk
kkkkkkkkkkkkkk


Homology SSG340 vs CSM-cDNA

<more CSM info> 
Sequences producing significant alignments:                      (bits) Value


SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                       1298   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                       1235   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                       1178   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                       1160   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                       1100   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        860   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        846   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                      846   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                         846   0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                        821   0.0


Homology SSG340 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...   821   0.0    6
BX530407|BX530407.4 Zebrafish DNA sequence *** SEQUENCING IN...    38   0.060  8
AC122888|AC122888.3 Mus musculus chromosome UNK clone RP23-9...    46   0.84   1
AC108909|AC108909.14 Mus musculus chromosome 3 clone RP24-24...    46   0.84   1
AX348713|AX348713.1 Sequence 171 from Patent WO0202807.            36   0.90   4
AX346118|AX346118.1 Sequence 1189 from Patent WO0200928.           36   0.90   4
AX344752|AX344752.1 Sequence 177 from Patent WO0200927.            36   0.90   4
AX344302|AX344302.1 Sequence 149 from Patent WO0200926.            36   0.90   4
AL929442|AL929442.9 Mouse DNA sequence from clone RP23-95M20...    44   1.7    3
AL121982|AL121982.19 Human DNA sequence from clone RP5-1185H...    44   2.4    3


Homology SSG340 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   470   e-131
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   298   2e-79
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...   105   3e-21
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...   105   3e-21
AB528107_1(AB528107|pid:none) Synthetic construct DNA, clone: pF...   104   6e-21
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...   104   6e-21
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...   102   2e-20
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...   100   9e-20
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    99   2e-19
(Q5JZQ9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    99   2e-19


Homology SSG340 vs Genome

<more Genome info> 





<List of Series> <Series: SSG3-B> <Clone: SSG340> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>





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