Homology SSG340 vs DNA
Query= SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/
(878 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
ddbjbct7.seq; /db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss8.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/b/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq;
/db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/b/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/b/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/b/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/b/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/b/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/b/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq
32,255,291 sequences; U,560,949,249 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma... 821 0.0 6
BX530407|BX530407.4 Zebrafish DNA sequence *** SEQUENCING IN... 38 0.060 8
AC122888|AC122888.3 Mus musculus chromosome UNK clone RP23-9... 46 0.84 1
AC108909|AC108909.14 Mus musculus chromosome 3 clone RP24-24... 46 0.84 1
AX348713|AX348713.1 Sequence 171 from Patent WO0202807. 36 0.90 4
AX346118|AX346118.1 Sequence 1189 from Patent WO0200928. 36 0.90 4
AX344752|AX344752.1 Sequence 177 from Patent WO0200927. 36 0.90 4
AX344302|AX344302.1 Sequence 149 from Patent WO0200926. 36 0.90 4
AL929442|AL929442.9 Mouse DNA sequence from clone RP23-95M20... 44 1.7 3
AL121982|AL121982.19 Human DNA sequence from clone RP5-1185H... 44 2.4 3
AF077537|AF077537.1 Caenorhabditis elegans cosmid F16G10, co... 44 2.8 4
AL831782|AL831782.4 Human DNA sequence from clone RP4-636P16... 44 3.3 1
AC105952|AC105952.2 Mus musculus clone RP23-95M18, LOW-PASS ... 44 3.3 1
BZ086453|BZ086453.1 lkf65c08.g1 B.oleracea002 Brassica olera... 44 3.3 1
BZ070011|BZ070011.1 lkf65c08.b1 B.oleracea002 Brassica olera... 44 3.3 1
BZ003314|BZ003314.1 oed91d10.b1 B.oleracea002 Brassica olera... 44 3.3 1
BH997272|BH997272.1 oef08c02.b1 B.oleracea002 Brassica olera... 44 3.3 1
BX649509|BX649509.6 Mouse DNA sequence *** SEQUENCING IN PRO... 36 4.3 5
CB338388|CB338388.1 kb54e05.y1 Brugia malayi 2D L3 pAMP1 v2 ... 38 6.1 2
AC133175|AC133175.2 Mus musculus chromosome UNK clone RP24-6... 32 6.4 5
AP000459|AP000459.4 Homo sapiens genomic DNA, chromosome 21q... 40 8.1 4
AC100323|AC100323.1 Mus musculus clone RP23-124P14, LOW-PASS... 36 8.5 2
BZ979724|BZ979724.1 PUFJB25TB ZM_0.6_1.0_KB Zea mays genomic... 34 9.0 2
AL356778|AL356778.13 Human DNA sequence from clone RP11-75C5... 42 13 1
AC025140|AC025140.2 Homo sapiens chromosome 3 clone RP11-331... 42 13 1
AE014301|AE014301.1 Homo sapiens chromosome 13q34 schizophre... 42 13 1
AL732417|AL732417.19 Mouse DNA sequence from clone RP23-36F2... 42 13 1
BP513003|BP513003.1 Hydra magnipapillata cDNA, clone:hmp_08956. 42 13 1
AC068887|AC068887.34 Homo sapiens chromosome 12 clone RP11-3... 42 13 1
AC097857|AC097857.6 Rattus norvegicus clone CH230-103E2, ***... 42 13 1
AC005146|AC005146.1 Homo sapiens 12 PAC RP1-157K6 (Roswell P... 42 13 1
AC128710|AC128710.2 Homo sapiens 3 BAC RP11-307C21 (Roswell ... 42 13 1
AC092951|AC092951.1 Homo sapiens chromosome 3q clone RP11-33... 42 13 1
AC010025|AC010025.6 Drosophila melanogaster 3L BAC RPCI98-20... 42 13 1
BB390943|BB390943.1 Mus musculus 0 day neonate cerebellum cD... 42 13 1
AC069219|AC069219.17 Homo sapiens 3 BAC RP11-376N7 (Roswell ... 42 13 1
AC006563|AC006563.5 Drosophila melanogaster chromosome 3 clo... 42 13 1
CA283230|CA283230.1 SCBGSD1051H02.g SD1 Saccharum officinaru... 42 13 1
AX686783|AX686783.1 Sequence 3 from Patent WO02074810. 42 13 1
BZ611554|BZ611554.1 WHACT11TF Human MCF7 breast cancer cell ... 42 13 1
BP508892|BP508892.1 Hydra magnipapillata cDNA, clone:hmp_03504. 42 13 1
BJ522521|BJ522521.1 Oryzias latipes cDNA clone:MF01SSB025C02... 42 13 1
AE003540|AE003540.3 Drosophila melanogaster chromosome 3L, s... 42 13 1
BP517255|BP517255.1 Hydra magnipapillata cDNA, clone:hmp_13929. 42 13 1
AL060667|AL060667.1 Drosophila melanogaster genome survey se... 42 13 1
AX504840|AX504840.1 Sequence 1 from Patent WO0246404. 42 13 1
AC021589|AC021589.3 Homo sapiens clone RP11-140G18, WORKING ... 42 13 1
AL074142|AL074142.1 Drosophila melanogaster genome survey se... 42 13 1
AQ235938|AQ235938.1 HS_2056_A1_B03_T7 CIT Approved Human Gen... 42 13 1
AC118830|AC118830.8 Rattus norvegicus clone CH230-367H8, WOR... 42 13 1
AC017247|AC017247.1 Drosophila melanogaster, *** SEQUENCING ... 42 13 1
AC112446|AC112446.5 Rattus norvegicus clone CH230-233O3, WOR... 42 13 1
BP513334|BP513334.1 Hydra magnipapillata cDNA, clone:hmp_09403. 42 13 1
BJ538636|BJ538636.1 Oryzias latipes cDNA clone:MF01SSB025C02... 42 13 1
AL929232|AL929232.3 Mouse DNA sequence from clone RP23-294G1... 42 13 1
AC141665|AC141665.1 Apis mellifera clone CH224-54J16, WORKIN... 42 13 1
BP522386|BP522386.1 Hydra magnipapillata cDNA, clone:hmp_20231. 42 13 1
CQ595049|CQ595049.1 Sequence 22807 from Patent WO0171042. 42 13 1
T14641|T14641.1 SMEST0302 Schistosoma mansoni, adult worm, G... 42 13 1
BJ515447|BJ515447.1 Oryzias latipes cDNA clone:MF01FSA025K20... 42 13 1
AG090499|AG090499.1 Pan troglodytes DNA, clone: PTB-090B06.F. 42 13 1
BP513614|BP513614.1 Hydra magnipapillata cDNA, clone:hmp_09750. 42 13 1
AZ191324|AZ191324.1 SP_1019_A2_B02_SP6E Strongylocentrotus p... 42 13 1
>AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map
1005175-1418323 strain AX4, complete sequence.
Length = 413138
Score = 821 bits (414), Expect(6) = 0.0
Identities = 414/414 (100%)
Strand = Plus / Minus
Query: 1 gtccacaaacaccagtaccatggggaacattcaatgacaatgacgaaatcgaagtctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76740 gtccacaaacaccagtaccatggggaacattcaatgacaatgacgaaatcgaagtctact 76681
Query: 61 atatgcaagcaccagttttcgaagcagtttttggaaatttctttggtaagttgggtggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76680 atatgcaagcaccagttttcgaagcagtttttggaaatttctttggtaagttgggtggat 76621
Query: 121 atcattcagcaattggtttctatgaccttacaactggtttaaattatacagcagaatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76620 atcattcagcaattggtttctatgaccttacaactggtttaaattatacagcagaatatg 76561
Query: 181 atgctttctttgaagtaggaaatggtacattaccaaatatcataaatgtcgatggtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76560 atgctttctttgaagtaggaaatggtacattaccaaatatcataaatgtcgatggtaaag 76501
Query: 241 atgaacttttatggtgtaatgctggtatcctttgtactgttccatacattaatgaaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76500 atgaacttttatggtgtaatgctggtatcctttgtactgttccatacattaatgaaactt 76441
Query: 301 attgggataaaaacatctattcaactgcttcaaaaacttatatgggaacaattaatggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76440 attgggataaaaacatctattcaactgcttcaaaaacttatatgggaacaattaatggta 76381
Query: 361 ctcaattaaatcaatatatcgaatggatgcaacaatataatatttcaaatccag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76380 ctcaattaaatcaatatatcgaatggatgcaacaatataatatttcaaatccag 76327
Score = 369 bits (186), Expect(6) = 0.0
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 470 aacaacatgtgatgatttcactcaacaatcaatcgaacatttaggtagtattggtattaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76049 aacaacatgtgatgatttcactcaacaatcaatcgaacatttaggtagtattggtattaa 75990
Query: 530 ttataattgttcaacagttttcaagagagattacattaatcttttcactgaaaaaccaca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75989 ttataattgttcaacagttttcaagagagattacattaatcttttcactgaaaaaccaca 75930
Query: 590 accaatcgatttcacagaacattatgatgatatctttaaattctatgaagctgtattaga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75929 accaatcgatttcacagaacattatgatgatatctttaaattctatgaagctgtattaga 75870
Query: 650 aattaa 655
||||||
Sbjct: 75869 aattaa 75864
Score = 87.7 bits (44), Expect(6) = 0.0
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 428 ggacgtctggaacaattatggtcaagatttgtttgttccatcaa 471
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76092 ggacgtctggaacaattatggtcaagatttgtttgttccatcaa 76049
Score = 28.2 bits (14), Expect(6) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 394 aatataatatttca 407
||||||||||||||
Sbjct: 635 aatataatatttca 648
Score = 28.2 bits (14), Expect(6) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 524 tattaattataatt 537
||||||||||||||
Sbjct: 26830 tattaattataatt 26843
Score = 26.3 bits (13), Expect(6) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 614 tgatgatatcttt 626
|||||||||||||
Sbjct: 45731 tgatgatatcttt 45743
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 16,322,227
Number of Sequences: 32255291
Number of extensions: 16322227
Number of successful extensions: 1209447
Number of sequences better than 10.0: 126
length of query: 878
length of database: U,560,949,249
effective HSP length: 22
effective length of query: 856
effective length of database: T,851,332,847
effective search space: 31544740917032
effective search space used: 31544740917032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home