Dictyostelium discoideum cDNA Clone SSF373

Size:		0.8k
3' sequence:	*
5' sequence:	TM981002
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSF373

CAGAATGTCA TTTCCATATG AATATATATT TAAATACATC ATTATTGGTG
ATATGGGTGT AGGTAAATCA TGTCTCCTTC ACCAATTCAC TGAAAATAAA
TTCGTCCCAG ATTCACCACA TACAATTGGT GTAGAGTTTG GTACAAGAAT
TGTAGATGTA AATAATAAAA AAATTAAATT ACAAATTTGG GATACTGCAG
GTCAAGAAAG ATTCAGGGCA GTTACACGTT CATATTATAG AGGTGCAGCA
GGTGCATTAT TAGTTTATGA TATTACAAGA AGAATTACAT ACAACCACTT
AACCACTTGG TTAACTGATG CTAGAAATCT TACTAATCCA AACACTGTCA
TCATGTTAAT TGGTAACAAA AAAGATTTGG AAGGTCAAAG AGATGTCACC
TATGAAGAGG CTTCTGCTTT TGCAAAACAA AATGGTTTAA TTTTTGTGGA
ATCTAGTGCA AAAACTGGTG AGAATGTAGA AGAAGCTTTC TTAAGAACTG
CTAAATTAAT TTTCCAAAGC GTTCAAGAGG GTAATGTTGA TCTCATCCCG
GATGGAGGTA TTACCAAGAA CCCACCACAA ACCATCACTG ATAAACCTCA
AGATGCCAGT AAATGTTCTT GTTAATAAAA TTTTAAAAAA ----------

Translated Amino Acid Sequence SSF373

RMSFPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKL
QIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLI
GNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVD
LIPDGGITKNPPQTITDKPQDASKCSC**nfk---

Homology SSF373 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/                       1227   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                       1185   0.0
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                       1166   0.0
SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                       1166   0.0
SSK429 (SSK429Q) /CSM/SS/SSK4-B/SSK429Q.Seq.d/                       1158   0.0
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                       1120   0.0
VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                        920   0.0
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                        920   0.0
SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/                        920   0.0
SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/                        902   0.0

Homology SSF373 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U02927|U02927.1 Dictyostelium discoideum Ax3 Rab4 mRNA, comp...   837   0.0    3
BI394576|BI394576.1 pgp1n.pk002.c13 Normalized Chicken Pitui...    68   6e-23  4
AJ447472|AJ447472.1 Gallus gallus EST, clone library riken1,...    68   8e-23  4
AJ448404|AJ448404.1 Gallus gallus EST, clone library riken1,...    68   1e-22  4
BU230962|BU230962.1 603399161F1 CSEQCHN23 Gallus gallus cDNA...    68   1e-22  4
BP460824|BP460824.1 Sus scrofa mRNA, clone:OVRM10147G06, 5' ...    58   2e-22  5
AJ451757|AJ451757.1 Gallus gallus EST, clone library riken1,...    68   1e-21  4
BQ194903|BQ194903.1 UI-R-CN1-cmb-p-04-0-UI.s1 UI-R-CN1 Rattu...    46   7e-21  5
BU283659|BU283659.1 603602047F1 CSEQCHN54 Gallus gallus cDNA...    68   1e-20  3
BU326902|BU326902.1 603491746F1 CSEQCHN63 Gallus gallus cDNA...    68   1e-20  3

Homology SSF373 vs Protein

Sequences producing significant alignments:                      (bits) Value


U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA...   402   e-111
JI167346_1(JI167346|pid:none) TSA: Ascaris suum ASCF_2497_2530 m...   308   1e-82
GU289394_1(GU289394|pid:none) Aiptasia pulchella Rab14 mRNA, com...   307   2e-82
(P61107) RecName: Full=Ras-related protein Rab-14;  &(Q52NJ6) Re...   305   1e-81
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa...   304   2e-81
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209...   304   2e-81
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco...   303   4e-81
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei...   303   5e-81
E42148(E42148)GTP-binding protein rab14 - rat                         301   1e-80
EZ422585_1(EZ422585|pid:none) TSA: Glossina morsitans morsitans ...   301   2e-80

Homology SSF373 vs Genome