<List of Series> <Series: SSF3-C> <Clone: SSF349> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Clone SSF349
Dictyostelium discoideum cDNA Project Home
Size: 1.4k
3' sequence: TM971025
5' sequence: -
Whole insert?: *
Accession #:
Remarks: *
Sequence SSF349
---------- CTTTCTTCAA CCAGAAATTG TTTGGGATTT TAGACTACCA
CGTGTTAAAT CAATTAATGG CTCTGGTCAT AAATTTGGTC TATCTCCATT
GGGAGTTGGC TGGGTCGTAT GGAGAGGTAA AAATGACATT CACAAGGATT
TGGTATTCGA TGTCAACTAT CTTGGTGGCA ATATGCCAAC ATTTTCATTG
AATTTCTCAC GTCCAGGTGG TCAAATAGTA TGCCAGTACT ATAACTTTTT
GCGCCATGGT CGTAGTGGAT ATACCGCAGT TCATCAAGCT TGTCTAGATC
ATGGTATTTT CATTTCCAAG CAAGTTAAAA AACACGGTAT TTTTGATATT
GTTTATGATG GTACTGGTGC ACTTCCAGGT GCATGTTGGA AATTGAAAAA
AGATCCAAAA GTAAAATTCA ATCTCTTTGA CCTTTCAGAT AGAATGAGAA
ATAGAGGTTG GCAAATTGCA TCCTATACTC TACCAAACTT ACCAGATATT
GTAGTTCAAA GAGTATTAAT TAGACATGGT TTCAGTCATG ATATGGCAAT
GCTCTTAATT GAAGATTTCA ATCGTAGTAT TGAATATTTT GATAAACATC
CAATGGTTCA AAGTATTTCA AAAGATGAAG GTCAATCATT CCATCATTAA
AATTAAAAAA AAA
Translated Amino Acid Sequence SSF349
<All Frames>
---FLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGN
MPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDG
TGALPGACWKLKKDPKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSHD
MAMLLIEDFNRSIEYFDKHPMVQSISKDEGQSFHH*n*kk
Homology SSF349 vs CSM-cDNA
<more CSM info>
Sequences producing significant alignments: (bits) Value
SSF349 (SSF349Q) /CSM/SS/SSF3-C/SSF349Q.Seq.d/ 1277 0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/ 1269 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 1269 0.0
SLB349 (SLB349Q) /CSM/SL/SLB3-C/SLB349Q.Seq.d/ 1249 0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/ 1237 0.0
SFG506 (SFG506Q) /CSM/SF/SFG5-A/SFG506Q.Seq.d/ 1233 0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/ 1233 0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/ 1231 0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/ 1225 0.0
CFE515 (CFE515Q) /CSM/CF/CFE5-A/CFE515Q.Seq.d/ 1225 0.0
Homology SSF349 vs DNA
<more DNA info>
Sequences producing significant alignments: (bits) Value N
AR375678|AR375678.1 Sequence 684 from patent US 6605709. 46 0.045 2
AC006704|AC006704.1 Caenorhabditis elegans clone Y108G3a, **... 38 0.32 10
AC099713|AC099713.5 Mus musculus chromosome 15, clone RP23-4... 34 0.42 4
BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersico... 36 0.45 2
AB084781|AB084781.1 Mycoplasma mobile genes for P123, Gli349... 42 0.48 4
AC093011|AC093011.3 Homo sapiens X BAC RP11-40P7 (Roswell Pa... 46 0.63 1
AC125649|AC125649.4 Rattus norvegicus clone CH230-309G16, **... 46 0.63 1
AC131823|AC131823.3 Rattus norvegicus clone CH230-131F9, ***... 46 0.63 1
AC040895|AC040895.2 Homo sapiens chromosome 11 clone RP11-40... 46 0.63 1
CD483813|CD483813.1 atr01-20ms1-d05 Atr01 Amborella trichopo... 40 1.1 2
Homology SSF349 vs Protein
<more Protein info>
Sequences producing significant alignments: (bits) Value
(Q54IJ3) RecName: Full=Glutamate decarboxylase B; EC=4.... 328 1e-88
FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 291 1e-77
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 291 2e-77
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 285 2e-75
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 281 1e-74
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 276 5e-73
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 273 7e-72
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 272 1e-71
AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ... 264 2e-69
CP000272_522(CP000272|pid:none) Burkholderia xenovorans LB400 ch... 244 3e-63
Homology SSF349 vs Genome
<more Genome info>
<List of Series> <Series: SSF3-C> <Clone: SSF349> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Project Home