Dictyostelium discoideum cDNA Clone SSE705

Size:		1.5k
3' sequence:	HM971013
5' sequence:	*
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSE705

---------- GCACCCTTTC TTCAACCAGA AATTGTTTGG GATTTTAGAC
TACCACGTGT TAAATCAATT AATGGCTCTG GTCATAAATT TGGTCTATCT
CCATTGGGAG TTGGCTGGGT CGTATGGAGA GGTAAAAATG ACATTCACAA
GGATTTGGTA TTCGATGTCA ACTATCTTGG TGGCAATATG CCAACATTTT
CATTGAATTT CTCACGTCCA GGTGGTCAAA TAGTATGCCA GTACTATAAC
TTTTTGCGCC ATGGTCGTAG TGGATATACC GCAGTTCATC AAGCTTGTCT
AGATCATGGT ATTTTCATTT CCAAGCAAGT TAAAAAACAC GGTATTTTTG
ATATTGTTTA TGATGGTACT GGTGCACTTC CAGGTGCATG TTGGAAATTG
AAAAAAGATG CAAAAGTAAA ATTCAATCTC TTTGACCTTT CAGATAGAAT
GAGAAATAGA GGTTGGCAAA TTGCATCCTA TACTCTACCA AACTTACCAG
ATATTGTAGT TCAAAGAGTA TTAATTAGAC ATGGTTTCAG TCATGATATG
GCAATGCTCT TAATTGAAGA TTTCAATCGT AGTATTGAAT ATTTTGATAA
ACATCCAATG GTTCAAAGTA TTTCAAAAGA TGAAGGTCAA TCATTCCATC
ATTAAAATTA AAAAAAAAAA ATAAAAAAAA AAGCATCAAT AATTAATAAT
TAATCCAAAA AAA

Translated Amino Acid Sequence SSE705

---PFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGG
NMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYD
GTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSH
DMAMLLIEDFNRSIEYFDKHPMVQSISKDEGQSFHH*n*kkkikkkasiinn*skk

Homology SSE705 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/                       1287   0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1287   0.0
SSF349 (SSF349Q) /CSM/SS/SSF3-C/SSF349Q.Seq.d/                       1269   0.0
SLB349 (SLB349Q) /CSM/SL/SLB3-C/SLB349Q.Seq.d/                       1257   0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/                       1255   0.0
SFG506 (SFG506Q) /CSM/SF/SFG5-A/SFG506Q.Seq.d/                       1251   0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/                       1251   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1249   0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1243   0.0
CFE515 (CFE515Q) /CSM/CF/CFE5-A/CFE515Q.Seq.d/                       1243   0.0

Homology SSE705 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    34   0.011  14
AR375678|AR375678.1 Sequence 684 from patent US 6605709.           46   0.051  2
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 ma...    34   0.11   5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...    30   0.22   15
AC125649|AC125649.4 Rattus norvegicus clone CH230-309G16, **...    46   0.35   6
AC113844|AC113844.6 Rattus norvegicus clone CH230-134E24, **...    34   0.35   2
AC142173|AC142173.2 Rattus norvegicus clone CH230-135C19, WO...    34   0.36   2
AC006704|AC006704.1 Caenorhabditis elegans clone Y108G3a, **...    38   0.46   11
CG721246|CG721246.1 1119066B02.y1 1119 - RescueMu Grid AA Ze...    34   0.48   2
CG721216|CG721216.1 1119066A01.2EL_y1 1119 - RescueMu Grid A...    34   0.48   2

Homology SSE705 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54IJ3) RecName: Full=Glutamate decarboxylase B;          EC=4....   333   4e-90
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   297   4e-79
FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   296   5e-79
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   290   6e-77
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   288   2e-76
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   281   2e-74
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   278   2e-73
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   278   2e-73
AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ...   267   3e-70
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   249   7e-65

Homology SSE705 vs Genome