Dictyostelium discoideum cDNA Clone SSD124

Size:		1.7k
3' sequence:	TM970919
5' sequence:	TM980908
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSD124

ATTACAAGAT TAAAATCTGT AGCACATTTA CATAAAGGTC ATGTTATTGG
TATTGCACAT ACAAGATGGG CAACTCATGG TGGTAAAACT GATAAAAATG
CACATCCACA TCTTGATTAT AAAGATAGAG TTGCAGTTAT TCATAATGGT
GTAATTGAAA ATAATATTAT ATTAAAAGAA GAACTTGAAA AGAAAGGTAT
TGTTTTTAGA TCAGAAACTG ATACTGAAGT TATTGCACAA TTAATTGGTT
TATTTTTAGA TCAAGGATTA CAAATTGTTG ATGCAATTAA AGAAACACAA
AAGAAATTAC AAGGTACATG GGGTATTGCA GTAGTTTGTA AGGATAATCC
TGATCAAATT GTAGCAGCAA GAAATGGTAG TCCATTATTA ATTGGTATTG
GAAAGGATCG TATGTTTATT GCAAGTGAAC CAGGTGCATT TTCAAGACAT
ACCAAAGAGT TTATTTCAAT GGAAAATGGT GAGATTGCAG TATTGAAAGC
TGATGGACAT TCATTGGATT TAAGTAGAAT TGAAATGGCA GCACATGAAA
CCATTGC--- -------GTA TTCCAGATTC TCAATTGTAA ATGCCGTTGG
TTCATTGATT GCAAGAAGTT CAATTTGTGG TGTCTATTTA AATGCAGGTC
GTGAACATGC TGTAGCTTCA ACCAAAGCAT TCTCATCACA AGTTACAGTA
TTATCATTGG TTGCAAATTG GTTCGCTCAA CATAGAGGCA TCGAAGAGGG
TAAAAGACGT CAGTTAATCG ATTCTCTTCA TCGTTTACCA ACAAATTTGG
GTATGGCATT ACGTGTTCGT GAACAATGTA AAGCAATCGC TCAAAAAATT
TATAAAAAGA ATTCAATCTT TGTTTTGGGT AAAGGTTTCG CTGAACCAAT
CGCATTTGAA GGTGCTTTGA AAATTAAAGA AATCACCTAT TGTCATGCTG
AAGGTTATAG TGGTGGTGCT CTTAAACATG GTCCATTCGC TCTCATTGAA
CAAGATACAC CAATTATCTT GATCATTTTA GATGATAGTA ATTCTCCATT
AATGAGAGTC GCCGCTGAAG AAGTAAAAGC AAGAGGTGCT CATACTATCG
TCATTACAAA TAATTCAACT TTGGCTAAAC ATATCGCTCA TGATACCATT
TTAATTCCAA GTAATGGTAT TTTAACTGCA CTTTTAGCTG CAATTCCATT
ACAATTATTN GCTTATGAAA TGGCAATTTG TAAAAATATT GACCCAGATC
GTCCAAAAAA TTTAGCCAAN ACTGTAACAA CTGATTAAAA AAAAAAAAAA
AAA

Translated Amino Acid Sequence SSD124

ITRLKSVAHLHKGHVIGIAHTRWATHGGKTDKNAHPHLDYKDRVAVIHNGVIENNIILKE
ELEKKGIVFRSETDTEVIAQLIGLFLDQGLQIVDAIKETQKKLQGTWGIAVVCKDNPDQI
VAARNGSPLLIGIGKDRMFIASEPGAFSRHTKEFISMENGEIAVLKADGHSLDLSRIEMA
AHETI---

---YSRFSIVNAVGSLIARSSICGVYLNAGREHAVASTKAFSSQVTVLSLVANWFAQHRG
IEEGKRRQLIDSLHRLPTNLGMALRVREQCKAIAQKIYKKNSIFVLGKGFAEPIAFEGAL
KIKEITYCHAEGYSGGALKHGPFALIEQDTPIILIILDDSNSPLMRVAAEEVKARGAHTI
VITNNSTLAKHIAHDTILIPSNGILTALLAAIPLQLXAYEMAICKNIDPDRPKNLAXTVT
TD*kkkkk

Homology SSD124 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSD124 (SSD124Q) /CSM/SS/SSD1-A/SSD124Q.Seq.d/                       2478   0.0
AFM651 (AFM651Q) /CSM/AF/AFM6-C/AFM651Q.Seq.d/                       1352   0.0
CFI829 (CFI829Q) /CSM/CF/CFI8-B/CFI829Q.Seq.d/                       1334   0.0
SFE659 (SFE659Q) /CSM/SF/SFE6-C/SFE659Q.Seq.d/                       1326   0.0
AFO350 (AFO350Q) /CSM/AF/AFO3-C/AFO350Q.Seq.d/                       1318   0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/                       1304   0.0
AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/                       1302   0.0
VFD470 (VFD470Q) /CSM/VF/VFD4-C/VFD470Q.Seq.d/                       1239   0.0
AFL243 (AFL243Q) /CSM/AF/AFL2-B/AFL243Q.Seq.d/                       1229   0.0
CFF878 (CFF878Q) /CSM/CF/CFF8-D/CFF878Q.Seq.d/                       1187   0.0

Homology SSD124 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C92128) Dictyostelium discoideum slug cDNA, clone SSD124.       1411   0.0    1
(BJ347249) Dictyostelium discoideum cDNA clone:dda26e14, 3' ...  1350   0.0    1
(BJ345926) Dictyostelium discoideum cDNA clone:dda29d13, 3' ...  1310   0.0    1
(BJ375345) Dictyostelium discoideum cDNA clone:ddc18j08, 3' ...  1304   0.0    2
(BJ397992) Dictyostelium discoideum cDNA clone:dds10e16, 3' ...  1265   0.0    3
(BJ373933) Dictyostelium discoideum cDNA clone:ddc5o12, 3' e...  1265   0.0    3
(BJ343360) Dictyostelium discoideum cDNA clone:dda22g23, 3' ...  1257   0.0    3
(BJ430547) Dictyostelium discoideum cDNA clone:ddv7l18, 3' e...  1239   0.0    1
(BJ377342) Dictyostelium discoideum cDNA clone:ddc24a07, 3' ...  1162   0.0    1
(BJ372503) Dictyostelium discoideum cDNA clone:ddc12l20, 3' ...  1148   0.0    3

Homology SSD124 vs Protein

Sequences producing significant alignments:                      (bits) Value


FR823390_157(FR823390|pid:none) Neospora caninum Liverpool compl...   241   8e-62
AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro...   203   1e-50
CP002546_1372(CP002546|pid:none) Planctomyces brasiliensis DSM 5...   161   6e-38
HQ704802_171(HQ704802|pid:none) Organic Lake phycodnavirus 1 gen...   161   8e-38
CP000777_489(CP000777|pid:none) Leptospira biflexa serovar Patoc...   157   9e-37
CP001699_1986(CP001699|pid:none) Chitinophaga pinensis DSM 2588,...   155   4e-36
HQ704803_79(HQ704803|pid:none) Organic Lake phycodnavirus 2 geno...   154   8e-36
CP001814_5934(CP001814|pid:none) Streptosporangium roseum DSM 43...   153   2e-35
CP001792_867(CP001792|pid:none) Fibrobacter succinogenes subsp. ...   153   2e-35
CP001097_87(CP001097|pid:none) Chlorobium limicola DSM 245, comp...   151   6e-35

Homology SSD124 vs Genome