Homology SSC234 vs Protein
Query= SSC234 (SSC234Q) /CSM/SS/SSC2-B/SSC234Q.Seq.d/
(1318 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A54280(A54280) cell differentiation protein LagC precursor - sli... 392 e-107
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS... 381 e-104
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS... 381 e-104
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS... 381 e-104
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS... 381 e-104
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS... 381 e-104
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS... 375 e-102
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS... 375 e-102
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS... 375 e-102
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS... 373 e-101
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS... 372 e-101
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS... 372 e-101
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS... 370 e-100
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS... 370 e-100
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS... 367 e-100
AC116982_59(AC116982|pid:none) Dictyostelium discoideum chromoso... 254 8e-66
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS... 246 2e-63
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS... 243 2e-62
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS... 243 2e-62
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS... 243 2e-62
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS... 243 2e-62
AC116982_60(AC116982|pid:none) Dictyostelium discoideum chromoso... 162 1e-59
AC116982_4(AC116982|pid:none) Dictyostelium discoideum chromosom... 155 4e-36
AC116982_63(AC116982|pid:none) Dictyostelium discoideum chromoso... 105 8e-21
AF310896_4(AF310896|pid:none) Dictyostelium discoideum RacJ (rac... 84 2e-14
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 39 0.51
BC096773_1(BC096773|pid:none) Danio rerio choroideremia, mRNA (c... 38 1.1
BC154207_1(BC154207|pid:none) Danio rerio choroideremia, mRNA (c... 38 1.1
AY500891_1(AY500891|pid:none) Danio rerio Rab escort protein 1 (... 38 1.1
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS... 37 2.5
(Q54L75) RecName: Full=Tiger protein E1; AltName: Full=Loose agg... 37 2.5
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS... 37 2.5
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS... 37 2.5
T21064(T21064;T22550)hypothetical protein F53B7.5 - Caenorhabdit... 36 4.3
Z72507_22(Z72507|pid:none) Caenorhabditis elegans Cosmid F17C11,... 36 4.3
CP002326_141(CP002326|pid:none) Caldicellulosiruptor kristjansso... 36 4.3
CP003001_2025(CP003001|pid:none) Caldicellulosiruptor lactoaceti... 36 4.3
CP002219_2369(CP002219|pid:none) Caldicellulosiruptor hydrotherm... 36 4.3
AL844509_328(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 9.6
CP002745_2199(CP002745|pid:none) Collimonas fungivorans Ter331, ... 35 9.6
JN006158_1(JN006158|pid:none) Malus x domestica clone RS44 recep... 35 9.7
>A54280(A54280) cell differentiation protein LagC precursor - slime
mold (Dictyostelium discoideum)
&AF258615_1(AF258615|pid:none) &U09478_1(U09478|pid:none)
Length = 888
Score = 392 bits (1006), Expect = e-107
Identities = 197/212 (92%), Positives = 197/212 (92%)
Frame = +1
Query: 34 DEKSVTFELPHLRCRSFNINFTRSGITAKTLSISASLSVNVINRPTVSNGILNIEIYYMD 213
DEKSVTFELPHLRCRSFNINFTRSGITAKTLSISASLSVNVINRPTVSNGILNIEIYYMD
Sbjct: 430 DEKSVTFELPHLRCRSFNINFTRSGITAKTLSISASLSVNVINRPTVSNGILNIEIYYMD 489
Query: 214 CTISSSAPSITVGDXXXXXXXXXXXXXXXYYETTCPTPYGTGINKQFIFKLNSETVSDQF 393
CTISSSAPSITVGD YYETTCPTPYGTGINKQFIFKLNSETVSDQF
Sbjct: 490 CTISSSAPSITVGDSSSASPCSIPSSNSSYYETTCPTPYGTGINKQFIFKLNSETVSDQF 549
Query: 394 SYAPPEVENRTISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQELEDHQLTIKILD 573
SYAPPEVENRTISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQELEDHQLTIKILD
Sbjct: 550 SYAPPEVENRTISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQELEDHQLTIKILD 609
Query: 574 SYENGPINITVDGNYMDSLFYLTLPPVIYRIT 669
SYENGPINITVDGNYMDSLFYLTLPPVIYRIT
Sbjct: 610 SYENGPINITVDGNYMDSLFYLTLPPVIYRIT 641
Score = 285 bits (729), Expect = 4e-75
Identities = 146/163 (89%), Positives = 147/163 (90%)
Frame = +3
Query: 681 YIKPMISEIPTIENKIEKGILAIXRGYSFTDILNASLTVSSETVPLXCNLECSLSPNEIL 860
YIKPMISEIPTIENKIEKGILAI RGYSFTDILNASLTVSSETVPL CNLECSLSPNEIL
Sbjct: 718 YIKPMISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSETVPLSCNLECSLSPNEIL 777
Query: 861 DDSDSSETNMTNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSPNVS 1040
DDSDSSETN+TNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSPNVS
Sbjct: 778 DDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSPNVS 837
Query: 1041 QRDVETKSSKPSNGLIIGSTXXXXXXXXXXXXXXYYFKIPFRV 1169
QRDVETKSSKPSNGLIIGST YYFKIPFRV
Sbjct: 838 QRDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRV 880
Score = 40.4 bits (93), Expect = 0.23
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +1
Query: 358 FKLNSETVSDQ---FSYAPPEVENRTISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSE 528
F+L + D FSY P + + I ++G+NF L+KV +G D +
Sbjct: 191 FRLYYDETGDNPVPFSYESPIISSSVSDSSKQIITINGDNFFTDKDLVKVSFDGIDQPNF 250
Query: 529 IQELEDHQLTIKILDSYENGP--INITVDGNYMDSLFYLTLPPVIYRIT 669
I + Q+ + + + GP +NITVD ++ + P +I I+
Sbjct: 251 IISVNHKQIQVNNYNRVDPGPMSVNITVDEVSIEKNYIHCFPAIITSIS 299
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,683,194,840
Number of extensions: 46490395
Number of successful extensions: 119041
Number of sequences better than 10.0: 46
Number of HSP's gapped: 118784
Number of HSP's successfully gapped: 86
Length of query: 439
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 304
Effective length of database: 1,010,438,449
Effective search space: 307173288496
Effective search space used: 307173288496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home