Dictyostelium discoideum cDNA Clone SSC234

Size:		1.7k
3' sequence:	MBN970905
5' sequence:	TM980804
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSC234

CCCACNCGTC CGCCCACGCG TCCGTCATCA TCTGATGAAA AGAGTGTAAC
ATTTGAATTA CCTCATTTAA GATGTAGATC ATTTAATATT AATTTCACTC
GTTCTGGTAT TACCGCAAAA ACACTTTCAA TTTCAGCATC ATTATCAGTA
AATGTAATTA ATAGACCAAC AGTATCAAAT GGAATATTAA ATATTGAAAT
ATATTATATG GATTGTACAA TTAGTTCATC AGCACCAAGT ATTACTGTTG
GTGATTCATC ATCAGCCTCA CCATGTTCAA TACCATCATC AAATTCTAGT
TACTATGAAA CAACATGTCC AACACCATAC GGTACTGGTA TTAATAAACA
ATTTATATTC AAATTAAACT CAGAGACAGT CAGTGATCAA TTCTCATATG
CACCACCAGA AGTTGAGAAT CGTACAATTT CTGATGATGG AACTAATATT
GAATTACACG GTAATAATTT TGGTAATTCA ACATCATTAA TTAAAGTTTA
TTTAAATGGT AGTGACATTT CATCAGAAAT TCAAGAATTA GAAGATCATC
AATTAACTAT TAAAATATTG GATTCATATG AAAATGGCCC AATTAATATT
ACTGTAGATG GTAATTATAT GGATTCATTA TTTTATTTAA CATTACCTCC
TGTCATTTAT CGTATAAC-- --------CC TATATAAAAC CAATGATTTC
AGAAATTCCA ACCATTGAAA ATAAAATTGA AAAAGGTATT TTAGCAATAA
TNCGTGGTTA TAGTTTTACA GATATTCTCA ATGCAAGCTT AACAGTTTCA
TCAGAAACTG TTCCTCTNNC ATGTAATTTA GAATGTAGTT TATCCCCAAA
TGAAATACTT GATGATAGTG ATTCAAGTGA AACTAATATG ACAAATAGTA
ATACTGATTG TTTATCATGC CATTCCGGTT CAAGTGTGAA AAATACATCA
GGAGTATTAT ATCTCCTATT TAACTCAACA TCATTTCAAT ATAATGTCAC
AATTGAAGAA ATTAAATTAT CTCCATCACC AAACGTTAGT CAAAGAGATG
TTGAAACTAA ATCATCCAAA CCATCAAATG GTTTAATAAT AGGTTCTACA
ATTGGTAGTG TTGGTGGTGC TCTTGCTATC GGTGCTCTTG CCTATTACTT
TAAAATACCT TTTCGTGTGA AAAAATTTAT AGGTAAAAAA TTTTAAAAAA
AAAAATGTAA ATTTAAAATC ACAAATCACA TATCTGTAAA ATTAAAACTT
AACTGAAAGT GAAATAAATA AATAAATAAA TAAATGTTCN ATTAAAAAAA
AAAAAAAAAA AAAAAAAA

Translated Amino Acid Sequence SSC234

PTRPPTRPSSSDEKSVTFELPHLRCRSFNINFTRSGITAKTLSISASLSVNVINRPTVSN
GILNIEIYYMDCTISSSAPSITVGDSSSASPCSIPSSNSSYYETTCPTPYGTGINKQFIF
KLNSETVSDQFSYAPPEVENRTISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQEL
EDHQLTIKILDSYENGPINITVDGNYMDSLFYLTLPPVIYRI---

---YIKPMISEIPTIENKIEKGILAIXRGYSFTDILNASLTVSSETVPLXCNLECSLSPN
EILDDSDSSETNMTNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSP
NVSQRDVETKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRVKKFIGKKF*kkkck
fkitnhisvklkln*k*nk*ink*mfx*kkkkkkk

Homology SSC234 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSC234 (SSC234Q) /CSM/SS/SSC2-B/SSC234Q.Seq.d/                       2302   0.0
CFI487 (CFI487Q) /CSM/CF/CFI4-D/CFI487Q.Seq.d/                       1247   0.0
CFI183 (CFI183Q) /CSM/CF/CFI1-D/CFI183Q.Seq.d/                       1104   0.0
AHI790 (AHI790Q) /CSM/AH/AHI7-D/AHI790Q.Seq.d/                        993   0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/                        989   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                        989   0.0
CHL785 (CHL785Q) /CSM/CH/CHL7-D/CHL785Q.Seq.d/                        989   0.0
AHR269 (AHR269Q) /CSM/AH/AHR2-C/AHR269Q.Seq.d/                        989   0.0
AHN102 (AHN102Q) /CSM/AH/AHN1-A/AHN102Q.Seq.d/                        989   0.0
AHL496 (AHL496Q) /CSM/AH/AHL4-D/AHL496Q.Seq.d/                        989   0.0

Homology SSC234 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(U09478) Dictyostelium discoideum KAx-3 LagC protein (lagC) ...  1277   0.0    1
(FJ374940) Dictyostelium discoideum strain NC4 LagC1 gene, c...  1277   0.0    1
(FJ374936) Dictyostelium discoideum strain AX4 LagC1 gene, c...  1277   0.0    1
(AF258615) Dictyostelium discoideum LagC protein (lagC) gene...  1277   0.0    1
(BJ375228) Dictyostelium discoideum cDNA clone:ddc17n22, 3' ...  1247   0.0    1
(FJ374934) Dictyostelium discoideum strain QS8 LagC1 gene, c...  1181   0.0    1
(FJ374929) Dictyostelium discoideum strain QS21 LagC1 gene, ...  1181   0.0    1
(FJ374926) Dictyostelium discoideum strain QS15 LagC1 gene, ...  1181   0.0    1
(FJ374949) Dictyostelium discoideum strain QS36 LagC1 gene, ...  1174   0.0    1
(FJ374945) Dictyostelium discoideum strain QS113 LagC1 gene,...  1174   0.0    1

Homology SSC234 vs Protein

Sequences producing significant alignments:                      (bits) Value


A54280(A54280) cell differentiation protein LagC precursor - sli...   392   e-107
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   381   e-104
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   381   e-104
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   381   e-104
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   381   e-104
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...   381   e-104
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   375   e-102
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   375   e-102
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   375   e-102
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   373   e-101

Homology SSC234 vs Genome