Dictyostelium discoideum cDNA Clone SSC204

Size:		1.7k
3' sequence:	MBN970905
5' sequence:	*
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSC204

---------- CATATGGTGA TAGCCATGAT GACCAAGGAT ACCACTAGTA
CCACCACTAT TTTATTTAAA GGTATAATGT CAATTTCAGA TATACCAAGA
GATGATTCAA AAAGAGCAAT AAAGAAATTA AAATCAATGG GATTAAAATG
TTACATGGTA ACAGGTGATA ATAAAAGAGC AGCTAAATTC ATTGCAAATC
AAGTTGGCAT TGATGAAGAT CATATCTATT CAGAGGTTAT ACCAAAAGAG
AAAGCAGAGA AAGTTTCAGA TTTACAAGCT AGTGGTAATG TAGTTTGTTT
CGTTGGTGAT GGTGTTAATG ATTCACCTGC ATTGTCACAA GCTGATGTTG
GTATTTCAGT TGCAACTGGT ACTGATATCG CTATTGAATC ATCTTCAATC
GTTTTATTGA AAAATTCACT CACTGATGTT TATCGTTCAA TTCATTTATC
GAGAGTAGTT TTCCGTAGAA TTAAAATTAA TTTCACATTA GCTTTAATCT
ATAATCTTTG TGCTGTTCCA CTAGCCGCTG GTTTATTTAG AGTAATCTTT
GGTGTGTCTT TACCACCAAT GGCTGCTGCT GCTGCAATGG TAGTTTCTTC
ATTATCAGTT TTATCTTCTT CATTATTATT AAAACTTTAT TCTTCACCAA
ATTAAAAAAA AAAAAAAAAA

Translated Amino Acid Sequence SSC204

---MVIAMMTKDTTSTTTILFKGIMSISDIPRDDSKRAIKKLKSMGLKCYMVTGDNKRAA
KFIANQVGIDEDHIYSEVIPKEKAEKVSDLQASGNVVCFVGDGVNDSPALSQADVGISVA
TGTDIAIESSSIVLLKNSLTDVYRSIHLSRVVFRRIKINFTLALIYNLCAVPLAAGLFRV
IFGVSLPPMAAAAAMVVSSLSVLSSSLLLKLYSSPN*kkkkk

Homology SSC204 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSC204 (SSC204Q) /CSM/SS/SSC2-A/SSC204Q.Seq.d/                       1275   0.0
SSM483 (SSM483Q) /CSM/SS/SSM4-D/SSM483Q.Seq.d/                       1207   0.0
SHA773 (SHA773Q) /CSM/SH/SHA7-D/SHA773Q.Seq.d/                       1207   0.0
SSL788 (SSL788Q) /CSM/SS/SSL7-D/SSL788Q.Seq.d/                       1152   0.0
CHO653 (CHO653Q) /CSM/CH/CHO6-C/CHO653Q.Seq.d/                       1112   0.0
SSI134 (SSI134Q) /CSM/SS/SSI1-B/SSI134Q.Seq.d/                        991   0.0
SSJ731 (SSJ731Q) /CSM/SS/SSJ7-B/SSJ731Q.Seq.d/                        557   e-158
SSG280 (SSG280Q) /CSM/SS/SSG2-D/SSG280Q.Seq.d/                        398   e-110
SLB248 (SLB248Q) /CSM/SL/SLB2-B/SLB248Q.Seq.d/                         46   7e-04
SLH207 (SLH207Q) /CSM/SL/SLH2-A/SLH207Q.Seq.d/                         40   0.042

Homology SSC204 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C84001) Dictyostelium discoideum slug cDNA, clone SSC204.       1275   0.0    1
(AU039179) Dictyostelium discoideum slug cDNA, clone SSM483.     1207   0.0    1
(BJ403624) Dictyostelium discoideum cDNA clone:dds25b19, 3' ...  1185   0.0    2
(BJ385038) Dictyostelium discoideum cDNA clone:ddc51i14, 3' ...   965   0.0    7
(C93851) Dictyostelium discoideum slug cDNA, clone SSL788.        533   0.0    4
(C90138) Dictyostelium discoideum slug cDNA, clone SSI134.        991   0.0    1
(C91270) Dictyostelium discoideum slug cDNA, clone SSJ731.        557   e-154  1
(AU073160) Dictyostelium discoideum slug cDNA, clone SSG280.      398   e-106  1
(GR567037) CBTF2789.g1 CBTF Dictyostelium purpureum 12 hr ve...    44   8e-06  2
(GR580169) CBZY2601.g1 CBZY Dictyostelium purpureum 18 hr st...    44   8e-06  2

Homology SSC204 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116984_190(AC116984|pid:none) Dictyostelium discoideum chromos...   324   2e-87
CP002464_1756(CP002464|pid:none) Lactobacillus johnsonii DPC 602...   170   6e-41
AL590619_1(AL590619|pid:none) Mouse DNA sequence from clone RP23...   168   2e-40
(Q64446) RecName: Full=Copper-transporting ATPase 2;          EC...   168   2e-40
AB017791_1(AB017791|pid:none) Rattus norvegicus mRNA for ATPase ...   168   2e-40
AL590619_2(AL590619|pid:none) Mouse DNA sequence from clone RP23...   168   2e-40
CP001685_565(CP001685|pid:none) Leptotrichia buccalis DSM 1135, ...   167   3e-40
CP000517_1601(CP000517|pid:none) Lactobacillus helveticus DPC 45...   167   3e-40
AP007281_425(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D...   167   3e-40
BC143973_1(BC143973|pid:none) Homo sapiens ATPase, Cu++ transpor...   167   5e-40

Homology SSC204 vs Genome