Dictyostelium discoideum cDNA Clone SSA660

Size:		1.2k
3' sequence:	*
5' sequence:	TM980723
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSA660

AAAAATTAAA ATAAAAGAAA AAAAAATGAA AAGGACGATA ATAATATTAT
TATTTGTATC ATTATTTGTA ACATTTGTTT TATCACAAAT ACCAGATAAT
GATCCAGAAT TATGTCAACA AAGAATTCAA AGAGAGGATT GTCCACAAAC
ACCAGTACCA TGGGGAACAT TCAATGACAA TGACGAAATC GAAGTCTACT
ATATGCAAGC ACCAGTTTTC GAAGCAGTTT TTGGAAATTT CTTTGGTAAG
TTGGGTGGAT ATCATTCAGC AATTGGTTTC TATGACCTTA CAACTGGTTT
AAATTATACA GCAGAATATG ATGCTTTCTT TGAAGTAGGA AATGGTACAT
TACCAAATAT CATAAATGTC GATGGTAAAG ATGAACTTTT ATGGTGTAAT
GCTGGTATCC TTTGTACTGT TCCATACATT AATGAAACTT ATTGGGATAA
AAACATCTAT TCAACTGCTT CAAAAACTTA TATGGGAACA ATTAAT----
------

Translated Amino Acid Sequence SSA660

KIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPVPWGTFNDN
DEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEVGNGTLPNI
INVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTI---

Homology SSA660 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        920   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        920   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        920   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        920   0.0
SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/                        920   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        892   0.0
VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                        890   0.0
SSB231 (SSB231Q) /CSM/SS/SSB2-B/SSB231Q.Seq.d/                        821   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        769   0.0
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                        706   0.0

Homology SSA660 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU076369) Dictyostelium discoideum slug cDNA, clone SSA660.      920   0.0    1
(BJ425060) Dictyostelium discoideum cDNA clone:ddv54b16, 5' ...   920   0.0    1
(BJ417874) Dictyostelium discoideum cDNA clone:ddv15k22, 5' ...   920   0.0    1
(BJ415600) Dictyostelium discoideum cDNA clone:ddv23g06, 5' ...   920   0.0    1
(BJ414588) Dictyostelium discoideum cDNA clone:ddv19a22, 5' ...   920   0.0    1
(BJ413283) Dictyostelium discoideum cDNA clone:ddv14n24, 5' ...   920   0.0    1
(BJ411824) Dictyostelium discoideum cDNA clone:ddv5p20, 5' e...   739   0.0    3
(BJ389934) Dictyostelium discoideum cDNA clone:dds20i16, 5' ...   769   0.0    2
(AU061512) Dictyostelium discoideum slug cDNA, clone SLE504.      642   e-180  1
(AU073191) Dictyostelium discoideum slug cDNA, clone SSG340.      476   e-130  1

Homology SSA660 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   299   4e-80
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   299   4e-80
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    79   1e-13
AB528107_1(AB528107|pid:none) Synthetic construct DNA, clone: pF...    79   1e-13
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    79   1e-13
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    77   5e-13
AH014663_1(AH014663|pid:none) Canis lupus familiaris CLN5 (CLN5)...    77   5e-13
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    77   5e-13
(Q5JZQ9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    77   5e-13
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    76   6e-13

Homology SSA660 vs Genome