Homology SSA537 vs Protein
Query= SSA537 (SSA537Q) /CSM/SS/SSA5-B/SSA537Q.Seq.d/
(1216 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54DS3) RecName: Full=Transmembrane protein DDB_G0292058; Flags... 444 e-123
EF085853_1(EF085853|pid:none) Picea sitchensis clone WS02812_M21... 54 2e-05
AK064917_1(AK064917|pid:none) Oryza sativa Japonica Group cDNA c... 54 2e-05
FB861715_1(FB861715|pid:none) Sequence 80988 from Patent WO20080... 53 3e-05
FB861745_1(FB861745|pid:none) Sequence 81018 from Patent WO20080... 53 4e-05
FR873482_1760(FR873482|pid:none) Streptococcus salivarius JIM877... 46 0.005
AC152347_9(AC152347|pid:none) Medicago truncatula clone mth2-28c... 43 0.032
CP002980_99(CP002980|pid:none) Helicobacter pylori Puno120, comp... 41 0.12
AF062395_1(AF062395|pid:none) Borrelia turicatae 91E135 repeat m... 40 0.27
CP000685_241(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 40 0.35
CP002074_89(CP002074|pid:none) Helicobacter pylori PeCan4, compl... 40 0.35
CP001217_105(CP001217|pid:none) Helicobacter pylori P12, complet... 39 0.46
CP001173_88(CP001173|pid:none) Helicobacter pylori G27, complete... 39 0.46
CP002982_102(CP002982|pid:none) Helicobacter pylori Puno135, com... 39 0.46
AE000511_101(AE000511|pid:none) Helicobacter pylori 26695, compl... 39 0.60
AE017198_900(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 39 0.60
CP001072_96(CP001072|pid:none) Helicobacter pylori Shi470, compl... 39 0.60
CP002464_1089(CP002464|pid:none) Lactobacillus johnsonii DPC 602... 39 0.60
CP000241_104(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 39 0.78
AF143458_1(AF143458|pid:none) Borrelia hermsii strain HS1 BdrA2 ... 39 0.78
CP001582_100(CP001582|pid:none) Helicobacter pylori v225d, compl... 39 0.78
FN598874_1462(FN598874|pid:none) Helicobacter pylori B8 complete... 38 1.0
AP011941_1182(AP011941|pid:none) Helicobacter pylori F30 DNA, co... 38 1.0
AF311901_8(AF311901|pid:none) Citrobacter rodentium strain DBS10... 38 1.0
AP011940_116(AP011940|pid:none) Helicobacter pylori F16 DNA, com... 38 1.3
CP002340_1691(CP002340|pid:none) Streptococcus thermophilus ND03... 38 1.3
CP000012_101(CP000012|pid:none) Helicobacter pylori 51, complete... 38 1.3
CP000575_992(CP000575|pid:none) Staphylothermus marinus F1, comp... 37 1.7
CP001110_1099(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 37 2.3
CP001959_1957(CP001959|pid:none) Brachyspira murdochii DSM 12563... 37 2.3
CP003108_4076(CP003108|pid:none) Desulfosporosinus orientis DSM ... 37 2.3
CP002216_1542(CP002216|pid:none) Caldicellulosiruptor owensensis... 37 2.3
CP000879_833(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 37 2.3
CP001034_2413(CP001034|pid:none) Natranaerobius thermophilus JW/... 37 3.0
CP001680_99(CP001680|pid:none) Helicobacter pylori 52, complete ... 37 3.0
(Q9Z2Y3) RecName: Full=Homer protein homolog 1; Short=H... 36 3.9
AK076543_1(AK076543|pid:none) Mus musculus 0 day neonate head cD... 36 3.9
AF022236_10(AF022236|pid:none) Escherichia coli strain E2348/69 ... 36 3.9
A86048(A86048) escT [imported] - Escherichia coli (strain O157:H... 36 3.9
AB019479_1(AB019479|pid:none) Mus musculus mRNA for Vesl-1L, com... 36 3.9
CP000680_3741(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 36 3.9
AE003852_1512(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 36 3.9
U57967_1(U57967|pid:none) Staphylothermus marinus surface layer ... 36 5.1
CP002209_1115(CP002209|pid:none) Ferrimonas balearica DSM 9799, ... 36 5.1
AF451864_1(AF451864|pid:none) Tetrahymena thermophila clone pMBR... 36 5.1
AF451863_3(AF451863|pid:none) Tetrahymena thermophila clone pMBR... 36 5.1
CP002175_227(CP002175|pid:none) Halanaerobium praevalens DSM 222... 36 5.1
(Q2KJ56) RecName: Full=Homer protein homolog 1; Short=H... 36 5.1
AF451862_4(AF451862|pid:none) Tetrahymena thermophila clone pMBR... 35 6.6
AY450534_1(AY450534|pid:none) Human rhinovirus 37 polyprotein mR... 35 6.6
BC047438_1(BC047438|pid:none) Homo sapiens homer homolog 1 (Dros... 35 8.6
CP001393_1558(CP001393|pid:none) Caldicellulosiruptor bescii DSM... 35 8.6
AF128446_1(AF128446|pid:none) Borrelia turicatae plasmid-encoded... 35 8.6
CP002993_4778(CP002993|pid:none) Streptomyces sp. SirexAA-E, com... 35 8.6
CR555306_1190(CR555306|pid:none) Azoarcus aromaticum EbN1 comple... 35 8.6
AC138197_21(AC138197|pid:none) Oryza sativa (japonica cultivar-g... 35 8.6
CP000393_3129(CP000393|pid:none) Trichodesmium erythraeum IMS101... 35 8.6
CP001291_2728(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 8.6
FQ790271_214(FQ790271|pid:none) Botryotinia fuckeliana isolate T... 35 8.6
AY386371_43(AY386371|pid:none) Yaba monkey tumor virus, complete... 35 8.6
CP003057_2474(CP003057|pid:none) Xanthomonas oryzae pv. oryzicol... 35 8.6
CP000362_2884(CP000362|pid:none) Roseobacter denitrificans OCh 1... 35 8.6
CP002083_80(CP002083|pid:none) Hyphomicrobium denitrificans ATCC... 35 8.6
CP002377_2176(CP002377|pid:none) Vibrio furnissii NCTC 11218 chr... 35 8.6
CP001666_2378(CP001666|pid:none) Clostridium ljungdahlii DSM 135... 35 8.6
CP002829_787(CP002829|pid:none) Thermodesulfobacterium sp. OPB45... 35 8.6
AF128445_1(AF128445|pid:none) Borrelia turicatae plasmid-encoded... 35 8.6
>(Q54DS3) RecName: Full=Transmembrane protein DDB_G0292058; Flags:
Precursor;
Length = 553
Score = 444 bits (1141), Expect = e-123
Identities = 224/224 (100%), Positives = 224/224 (100%)
Frame = +3
Query: 3 LCFGGCKPTHGILCPGPKYDPDIGEGYSKGRVFILKLVTLIMVAGCVAVFITSLKGNSSV 182
LCFGGCKPTHGILCPGPKYDPDIGEGYSKGRVFILKLVTLIMVAGCVAVFITSLKGNSSV
Sbjct: 106 LCFGGCKPTHGILCPGPKYDPDIGEGYSKGRVFILKLVTLIMVAGCVAVFITSLKGNSSV 165
Query: 183 TSGINNLSDTVFNKTSYTLEQLIEISNQLNETKYQQFDQKQEIQSQLTQLISDGEELESK 362
TSGINNLSDTVFNKTSYTLEQLIEISNQLNETKYQQFDQKQEIQSQLTQLISDGEELESK
Sbjct: 166 TSGINNLSDTVFNKTSYTLEQLIEISNQLNETKYQQFDQKQEIQSQLTQLISDGEELESK 225
Query: 363 GEDISSNAKDINNIRTKIIIVGLVFCMVVAGLIGVSALIGLPRISRAASIALVILIPFMW 542
GEDISSNAKDINNIRTKIIIVGLVFCMVVAGLIGVSALIGLPRISRAASIALVILIPFMW
Sbjct: 226 GEDISSNAKDINNIRTKIIIVGLVFCMVVAGLIGVSALIGLPRISRAASIALVILIPFMW 285
Query: 543 IVFSVHYPINSVVADICISYDTTGVQQLSNFTNPIIEQVFEGCQ 674
IVFSVHYPINSVVADICISYDTTGVQQLSNFTNPIIEQVFEGCQ
Sbjct: 286 IVFSVHYPINSVVADICISYDTTGVQQLSNFTNPIIEQVFEGCQ 329
Score = 257 bits (656), Expect = 1e-66
Identities = 127/140 (90%), Positives = 127/140 (90%)
Frame = +2
Query: 686 KCKNAPTCGDLSTCDPSILTEVMSCDWVDVSSVNSCSQGGCQYNQQVVNTTKQIMQLYDI 865
KCKNAPTCGDLSTCDPSILTEVMSCDWVDVSSVNSCSQGGCQYNQQVVNTTKQIMQLYDI
Sbjct: 414 KCKNAPTCGDLSTCDPSILTEVMSCDWVDVSSVNSCSQGGCQYNQQVVNTTKQIMQLYDI 473
Query: 866 LTSLTTLWTDKVVPLIKCSYLMPFIDEVQNIVCVDEVNSLDLLIAPTAVFAXXXXXXXXX 1045
LTSLTTLWTDKVVPLIKCSYLMPFIDEVQNIVCVDEVNSLDLLIAPTAVFA
Sbjct: 474 LTSLTTLWTDKVVPLIKCSYLMPFIDEVQNIVCVDEVNSLDLLIAPTAVFAILLTGLGIT 533
Query: 1046 XXXXSKRFNSKYRVKGSRSA 1105
SKRFNSKYRVKGSRSA
Sbjct: 534 GILGSKRFNSKYRVKGSRSA 553
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,058,158,724
Number of extensions: 58329659
Number of successful extensions: 165582
Number of sequences better than 10.0: 67
Number of HSP's gapped: 165258
Number of HSP's successfully gapped: 69
Length of query: 405
Length of database: 1,732,582,204
Length adjustment: 134
Effective length of query: 271
Effective length of database: 1,015,787,662
Effective search space: 275278456402
Effective search space used: 275278456402
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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