Dictyostelium discoideum cDNA Clone SSA537

Size:		1.5k
3' sequence:	MBN970805
5' sequence:	TM980721
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSA537

GTCTTTGTTT TGGTGGTTGT AAACCAACAC ATGGTATTCT TTGTCCAGGT
CCAAAATATG ACCCAGATAT TGGTGAAGGT TACTCAAAGG GTAGAGTTTT
TATATTAAAA TTGGTTACAT TAATTATGGT TGCAGGTTGT GTTGCAGTTT
TCATTACAAG TTTAAAGGGT AATTCCTCTG TGACCTCTGG TATTAACAAT
TTGAGTGACA CTGTTTTCAA TAAAACCTCA TACACTTTAG AACAATTGAT
TGAGATTAGT AATCAATTAA ATGAGACTAA ATATCAACAA TTTGATCAAA
AACAAGAGAT TCAATCACAA TTGACCCAAT TGATTAGCGA TGGTGAGGAA
CTCGAGAGTA AAGGCGAGGA TATCAGTTCC AACGCAAAGG ATATAAATAA
TATTAGAACA AAGATCATTA TCGTCGGTTT AGTATTTTGC ATGGTAGTGG
CAGGCCTCAT TGGTGTATCA GCACTAATTG GTCTACCAAG AATTTCACGT
GCAGCCTCTA TCGCTTTGGT AATTTTAATT CCATTCATGT GGATCGTTTT
CTCTGTTCAT TATCCAATCA ATAGTGTCGT TGCTGATATT TGTATAAGTT
ATGATACAAC TGGTGTACAA CAATTATCAA ATTTTACAAA TCCAATTATC
GAACAGGTCT TTGAAGGCTG TCAAA----- -----AAATG TAAGAATGCA
CCAACTTGTG GTGATTTATC AACTTGTGAT CCATCCATTC TTACCGAAGT
TATGTCTTGT GATTGGGTAG ATGTTAGTTC TGTTAATTCT TGCTCTCAAG
GTGGTTGCCA ATACAACCAA CAAGTTGTAA ATACTACAAA ACAAATTATG
CAACTTTATG ATATCTTAAC TTCACTCACT ACTCTTTGGA CTGATAAAGT
TGTACCATTA ATTAAATGTT CATATCTTAT GCCATTCATA GATGAAGTTC
AAAATATTGT TTGCGTTGAT GAAGTTAATT CTTTAGATCT CTTAATAGCT
CCAACTGCAG TGTTTGCCAT TTTATTAACT GGACTTGGTA TTACTGGTAT
CTTAGGAAGT AAGAGATTTA ATTCCAAATA CCGTGTAAAG GGAAGTAGAT
CAGCTTAATT CCTTGATTAT CAAGTTTTTA CTATAATTAT ATATATATAC
AAAATCGACT GTTAAATATT TGAATAACTT AAATAAAGTT TATTTATTTT
CTAAAATTAA AAAAAA

Translated Amino Acid Sequence SSA537

LCFGGCKPTHGILCPGPKYDPDIGEGYSKGRVFILKLVTLIMVAGCVAVFITSLKGNSSV
TSGINNLSDTVFNKTSYTLEQLIEISNQLNETKYQQFDQKQEIQSQLTQLISDGEELESK
GEDISSNAKDINNIRTKIIIVGLVFCMVVAGLIGVSALIGLPRISRAASIALVILIPFMW
IVFSVHYPINSVVADICISYDTTGVQQLSNFTNPIIEQVFEGCQ---

---KCKNAPTCGDLSTCDPSILTEVMSCDWVDVSSVNSCSQGGCQYNQQVVNTTKQIMQL
YDILTSLTTLWTDKVVPLIKCSYLMPFIDEVQNIVCVDEVNSLDLLIAPTAVFAILLTGL
GITGILGSKRFNSKYRVKGSRSA*fldyqvftiiiyiykidc*ife*lk*slfif*n*kk

Homology SSA537 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSA537 (SSA537Q) /CSM/SS/SSA5-B/SSA537Q.Seq.d/                       2264   0.0
SSF190 (SSF190Q) /CSM/SS/SSF1-D/SSF190Q.Seq.d/                       1029   0.0
SLE313 (SLE313Q) /CSM/SL/SLE3-A/SLE313Q.Seq.d/                        950   0.0
AHQ437 (AHQ437Q) /CSM/AH/AHQ4-B/AHQ437Q.Seq.d/                        910   0.0
AFI885 (AFI885Q) /CSM/AF/AFI8-D/AFI885Q.Seq.d/                        638   0.0
FC-IC0541 (FC-IC0541Q) /CSM/FC-IC/FC-IC0541Q.Seq.d/                   432   e-120
FC-IC1231 (FC-IC1231Q) /CSM/FC-IC/FC-IC1231Q.Seq.d/                   103   6e-21
VFJ177 (VFJ177Q) /CSM/VF/VFJ1-D/VFJ177Q.Seq.d/                         96   2e-18
SSM708 (SSM708Q) /CSM/SS/SSM7-A/SSM708Q.Seq.d/                         96   2e-18
SSM258 (SSM258Q) /CSM/SS/SSM2-C/SSM258Q.Seq.d/                         96   2e-18

Homology SSA537 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C83895) Dictyostelium discoideum slug cDNA, clone SSA537.        896   0.0    2
(AU034771) Dictyostelium discoideum slug cDNA, clone SLE313.      880   0.0    2
(BJ357378) Dictyostelium discoideum cDNA clone:dda63j10, 3' ...   888   0.0    3
(AU061452) Dictyostelium discoideum slug cDNA, clone SLE313.      862   0.0    1
(BJ338887) Dictyostelium discoideum cDNA clone:dda63j10, 5' ...   504   0.0    2
(BJ344243) Dictyostelium discoideum cDNA clone:dda18j22, 3' ...   638   e-178  1
(AU072689) Dictyostelium discoideum slug cDNA, clone SSA537.      476   e-129  1
(GR578081) CBZY1030.b1 CBZY Dictyostelium purpureum 18 hr st...    78   1e-31  4
(GR583116) CCAA1376.b1 CCAA Dictyostelium purpureum 0 hr sta...    78   1e-23  4
(BJ414618) Dictyostelium discoideum cDNA clone:ddv19i19, 5' ...    58   3e-23  3

Homology SSA537 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54DS3) RecName: Full=Transmembrane protein DDB_G0292058; Flags...   444   e-123
EF085853_1(EF085853|pid:none) Picea sitchensis clone WS02812_M21...    54   2e-05
AK064917_1(AK064917|pid:none) Oryza sativa Japonica Group cDNA c...    54   2e-05
FB861715_1(FB861715|pid:none) Sequence 80988 from Patent WO20080...    53   3e-05
FB861745_1(FB861745|pid:none) Sequence 81018 from Patent WO20080...    53   4e-05
FR873482_1760(FR873482|pid:none) Streptococcus salivarius JIM877...    46   0.005
AC152347_9(AC152347|pid:none) Medicago truncatula clone mth2-28c...    43   0.032
CP002980_99(CP002980|pid:none) Helicobacter pylori Puno120, comp...    41   0.12
AF062395_1(AF062395|pid:none) Borrelia turicatae 91E135 repeat m...    40   0.27
CP000685_241(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    40   0.35

Homology SSA537 vs Genome