Homology SSA393 vs Protein
Query= SSA393 (SSA393Q) /CSM/SS/SSA3-D/SSA393Q.Seq.d/
(264 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF203735_1(AF203735|pid:none) Dictyostelium discoideum culminati... 105 1e-21
T21876(T21876)hypothetical protein F36G9.7 - Caenorhabditis eleg... 34 2.3
AE014188_338(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 33 6.7
>AF203735_1(AF203735|pid:none) Dictyostelium discoideum culmination
specific protein 45D (45D) mRNA, complete cds.
Length = 56
Score = 105 bits (261), Expect = 1e-21
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +1
Query: 112 MDMVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHK 264
MDMVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHK
Sbjct: 1 MDMVNMVGAISTMKSRLVKKNSTKNKRNLRNSYLSCTLSLPSNKNCINVHK 51
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 683,015,585
Number of extensions: 13226998
Number of successful extensions: 21641
Number of sequences better than 10.0: 3
Number of HSP's gapped: 21629
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 1,732,582,204
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,422,327,850
Effective search space: 42669835500
Effective search space used: 42669835500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
Dictyostelium discoideum cDNA Project Home