Homology SSA379 vs Protein
Query= SSA379 (SSA379Q) /CSM/SS/SSA3-D/SSA379Q.Seq.d/
(428 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP002390_419(CP002390|pid:none) Filifactor alocis ATCC 35896, co... 37 0.47
CP002171_1615(CP002171|pid:none) Thermoanaerobacterium thermosac... 33 5.2
CP002108_447(CP002108|pid:none) Mycoplasma leachii PG50 clone MU... 32 8.8
FR668087_254(FR668087|pid:none) Mycoplasma leachii 99/014/6 comp... 32 8.8
>CP002390_419(CP002390|pid:none) Filifactor alocis ATCC 35896,
complete genome.
Length = 1365
Score = 36.6 bits (83), Expect = 0.47
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +1
Query: 49 YPLFVGK-KKNTKKEWMEQSKRTRKWFR-LSNVLSFIVPIKPHIEAAIVHIQ--RSIVTL 216
Y +VGK KKN KK W+E+ + ++++ L +L I P+K +E + I+ ++ L
Sbjct: 361 YTAYVGKLKKNNKKYWIEKKRNPEEFYKSLGKLLDKIEPLKEDLEVLTMMIEECKNHTLL 420
Query: 217 QQQLNSQFDLINTPIENFPLDEITE 291
Q N +I + L +I E
Sbjct: 421 PIQKNKDNGVIPHQVHEVELKKILE 445
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 807,050,611
Number of extensions: 13907230
Number of successful extensions: 37570
Number of sequences better than 10.0: 4
Number of HSP's gapped: 37550
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 1,732,582,204
Length adjustment: 105
Effective length of query: 37
Effective length of database: 1,170,914,839
Effective search space: 43323849043
Effective search space used: 43323849043
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
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