Dictyostelium discoideum cDNA Clone SSA108

Size:		1.5k
3' sequence:	TM980717
5' sequence:	TM961015
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSA108

ATTAAAATAA ATCACTTTAT TTTAAAAAAA AAATGGGTAA AAAAGATAAA
AATGTATCAG TTGAAGAAGA AGTTGATGAA GCTGAAATTG AAAAATTGGC
AGCTGAAAAT GCAAATAAAC CAGCTCCACA ATTAACAAAA GAAGATCTTG
ATGCAATGGA TGATGCTGAA CCTGGAACAT CAAGACTTGC TCTAATTGGT
AAAATGATTA AAAAAGTTAG TATCGGTACT GATATTTCAA ATATTTCAAT
GCCTGGTTCT TTTATCCTTG CCAAATCAAC TCTAAGTTAT TTTTCTGATA
ATTTTTCTTC ATTCTTTGGA GAATTATTAA AGGCAAATAA AATTGATAAT
GAATTAGAAA GAATGTTACA AGTTCAAAGA TACTTATTTA CTACTTTAAA
AGAAACAGAA GGATACAACT AGAAAACCAT TAAATCCAAT ATTAGGAGAA
ACATGGCAAG CAAATATTCA TGTAAAAGAT GGTGATGGTA ATGATGTTAC
AGATAATTAT TTCTTTGCTG AACAAATTTC ACATCATCCA CCAATTTCAA
GTTCAACAGT TTACAATAAG AAGGAGGGTG TTAATTGTAC ATTCTGTTTA
CCTGTAAGAT CACAATTCAT GGGTACTATG TAAAGATTTC ATTTGAAGGT
GAA------- ---AAGGGTT TAATTTATTA ATTTTTTTTT TTTTTCCTTT
AAAAAAAAAA AAAAAAAAAA AAAAGAATTA ATCATTTAAA AAAAAAAAAA
AAAAAAAAAA AAAAAATATT TGATGACCAA TCATTTCCAA TTATAATTGT
AAAAAAAAAA AAAAATATAT TAAAAATTGT TTAAATAAAA TTATTTTGTT
TTAAAATTAA AAAAAAA

Translated Amino Acid Sequence SSA108

*nkslyfkkkmgkkdknvsveeevdeaeieklaaenankpapqltkedldamddaepgts
rlaligkmikkvsigtdisnismpgsfilakstlsyfsdnfssffgellkankidneler
mlqvqrylfttlketegyn*ktiksnirrnmaskysckrw*w**cyr*lflc*tnftsst
nfkfnslq*eggc*LYILFTCKITIHGYYVKISFEGE---

---GFNLLIFFFFPLKKKKKKKKN*sfkkkkkkkkkni**piisnynckkkkkyikncln
kiilf*n*kk

Homology SSA108 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSA108 (SSA108Q) /CSM/SS/SSA1-A/SSA108Q.Seq.d/                       1191   0.0
SSE223 (SSE223Q) /CSM/SS/SSE2-A/SSE223Q.Seq.d/                       1106   0.0
SSB566 (SSB566Q) /CSM/SS/SSB5-C/SSB566Q.Seq.d/                        567   e-160
SLA367 (SLA367Q) /CSM/SL/SLA3-C/SLA367Q.Seq.d/                        507   e-143
SSB140 (SSB140Q) /CSM/SS/SSB1-B/SSB140Q.Seq.d/                        502   e-141
SSJ301 (SSJ301Q) /CSM/SS/SSJ3-A/SSJ301Q.Seq.d/                        355   7e-97
SSG759 (SSG759Q) /CSM/SS/SSG7-C/SSG759Q.Seq.d/                        165   1e-39
SSK295 (SSK295Q) /CSM/SS/SSK2-D/SSK295Q.Seq.d/                        101   2e-20
SSM374 (SSM374Q) /CSM/SS/SSM3-D/SSM374Q.Seq.d/                         86   1e-15
SSI659 (SSI659Q) /CSM/SS/SSI6-C/SSI659Q.Seq.d/                         86   1e-15

Homology SSA108 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C24613) Dictyostelium discoideum slug cDNA, clone SL-X008.      1191   0.0    2
(AJ488770) Dictyostelium discoideum mRNA for OSBPa protein (...   712   0.0    4
(AU060121) Dictyostelium discoideum slug cDNA, clone SLA367.      353   e-138  2
(AU072338) Dictyostelium discoideum slug cDNA, clone SSE223.      476   e-130  1
(AU071288) Dictyostelium discoideum slug cDNA, clone SSB140.      476   e-130  1
(AU071461) Dictyostelium discoideum slug cDNA, clone SSB566.      297   e-124  2
(C89757) Dictyostelium discoideum slug cDNA, clone SSG759.        125   4e-35  2
(C91320) Dictyostelium discoideum slug cDNA, clone SSK295.         62   3e-16  2
(AU074022) Dictyostelium discoideum slug cDNA, clone SSJ301.       66   2e-14  2
(AU075920) Dictyostelium discoideum slug cDNA, clone SSA108.       68   6e-11  2

Homology SSA108 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q8MPQ7) RecName: Full=Oxysterol-binding protein 1; AltName: Ful...   216   4e-96
(Q86KG4) RecName: Full=Oxysterol-binding protein 4; AltName: Ful...    57   1e-10
AP007151_1295(AP007151|pid:none) Aspergillus oryzae RIB40 DNA, S...    51   4e-08
(Q9UW25) RecName: Full=Oxysterol-binding protein-like protein OB...    44   4e-08
AM270143_14(AM270143|pid:none) Aspergillus niger contig An07c026...    52   5e-08
(O74178) RecName: Full=Protein kes1;  &AL034353_4(AL034353|pid:n...    54   5e-08
(P0C199) RecName: Full=Protein KES1;                                   50   1e-07
(Q54RM1) RecName: Full=Oxysterol-binding protein 7; AltName: Ful...    40   2e-07
Z70269_4(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ...    59   4e-07
Z70269_3(Z70269|pid:none) Caenorhabditis elegans Cosmid ZK1086, ...    59   4e-07

Homology SSA108 vs Genome