Homology SLG288 vs DNA
Query= SLG288 (SLG288Q) /CSM/SL/SLG2-D/SLG288Q.Seq.d/
(1163 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY232268) Dictyostelium discoideum putative protein Roco6 (... 1618 0.0 2
(AU061839) Dictyostelium discoideum slug cDNA, clone SLG288. 1213 0.0 1
(BJ385992) Dictyostelium discoideum cDNA clone:ddc56f22, 3' ... 850 0.0 4
(BJ442894) Dictyostelium discoideum cDNA clone:ddv51d10, 3' ... 831 0.0 3
(BJ356039) Dictyostelium discoideum cDNA clone:dda59e02, 3' ... 831 0.0 3
(BJ349969) Dictyostelium discoideum cDNA clone:dda38b07, 3' ... 825 0.0 4
(BJ436452) Dictyostelium discoideum cDNA clone:ddv31p03, 3' ... 821 0.0 4
(BJ352843) Dictyostelium discoideum cDNA clone:dda48i05, 3' ... 821 0.0 4
(BJ398331) Dictyostelium discoideum cDNA clone:dds12d05, 3' ... 791 0.0 3
(AU275183) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 767 0.0 2
(AU275184) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 761 0.0 3
(AU275182) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 761 0.0 2
(BJ354075) Dictyostelium discoideum cDNA clone:dda52n11, 3' ... 761 0.0 2
(BJ350367) Dictyostelium discoideum cDNA clone:dda39j13, 3' ... 761 0.0 4
(AU275185) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 759 0.0 2
(BJ349452) Dictyostelium discoideum cDNA clone:dda36d18, 3' ... 759 0.0 4
(BJ405259) Dictyostelium discoideum cDNA clone:dds31i01, 3' ... 755 0.0 3
(BJ408030) Dictyostelium discoideum cDNA clone:dds44p09, 3' ... 751 0.0 3
(BJ386276) Dictyostelium discoideum cDNA clone:ddc57n16, 3' ... 751 0.0 2
(BJ442473) Dictyostelium discoideum cDNA clone:ddv50a02, 3' ... 688 0.0 2
(BJ351919) Dictyostelium discoideum cDNA clone:dda45d03, 3' ... 686 0.0 2
(BJ350757) Dictyostelium discoideum cDNA clone:dda40n20, 3' ... 680 0.0 4
(BJ379099) Dictyostelium discoideum cDNA clone:ddc33d20, 3' ... 678 0.0 4
(AU039734) Dictyostelium discoideum slug cDNA, clone SLG288. 656 0.0 2
(AU039066) Dictyostelium discoideum slug cDNA, clone SSM339. 630 0.0 3
(BJ409526) Dictyostelium discoideum cDNA clone:dds42l12, 3' ... 622 0.0 3
(BJ381679) Dictyostelium discoideum cDNA clone:ddc42f12, 3' ... 585 0.0 3
(BJ357305) Dictyostelium discoideum cDNA clone:dda63j02, 3' ... 585 0.0 3
(BJ387039) Dictyostelium discoideum cDNA clone:dds12d05, 5' ... 1074 0.0 1
(BJ382134) Dictyostelium discoideum cDNA clone:ddc43b05, 3' ... 531 0.0 3
(AU267720) Dictyostelium discoideum vegetative cDNA clone:VS... 656 0.0 2
(BJ341129) Dictyostelium discoideum cDNA clone:dda5g12, 3' e... 517 0.0 2
(AU267721) Dictyostelium discoideum vegetative cDNA clone:VS... 531 0.0 3
(AU074878) Dictyostelium discoideum slug cDNA, clone SSM339. 468 e-127 1
(BJ324218) Dictyostelium discoideum cDNA clone:dda5g12, 5' e... 341 4e-89 1
(AC166677) Bos taurus clone CH240-180O22, WORKING DRAFT SEQU... 50 0.19 1
(DQ270029) Bartonella koehlerae immunogenic protein P26 gene... 50 0.19 1
(CU432800) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 36 0.55 2
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.77 1
(AP003793) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.77 1
(CE443900) tigr-gss-dog-17000336296881 Dog Library Canis lup... 48 0.77 1
(AC144540) Medicago truncatula chromosome 8 clone mth2-19p16... 40 0.84 4
(AB261051) Entamoeba histolytica gene for beta prime-COP, co... 38 0.89 3
(AC144657) Medicago truncatula chromosome 8 clone mth2-16a6,... 40 1.3 4
(GH262140) EST_eluc_evq_1021656 elucevq mixed_tissue Esox lu... 36 2.9 2
(AZ667810) ENTKE05TR Entamoeba histolytica Sheared DNA Entam... 38 3.0 2
(AP010450) Lotus japonicus genomic DNA, chromosome 2, clone:... 46 3.0 1
(AM428837) Vitis vinifera contig VV78X022441.4, whole genome... 46 3.0 1
(AC122164) Medicago truncatula clone mth2-24h4, complete seq... 46 3.0 1
(FP103025) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(CU856398) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(AP010623) Lotus japonicus genomic DNA, chromosome 2, clone:... 46 3.0 1
(AC184383) Strongylocentrotus purpuratus clone R3-3100K13, W... 46 3.0 1
(AC180873) Strongylocentrotus purpuratus clone R3-3067L20, W... 46 3.0 1
(AZ135866) SP_0153_B2_F10_T7A Strongylocentrotus purpuratus,... 46 3.0 1
(ER294573) 1092343638135 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.0 1
(BZ126038) CH230-452A17.TV CHORI-230 Segment 2 Rattus norveg... 40 3.4 2
(DU770849) APKG2161.g2 HF4000_12-21-03 uncultured marine mic... 40 3.4 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 5.5 2
(EI164533) DH033I20_F1.ab1 Brachypodium distachyon Bd21 Hind... 34 7.8 2
(AA269007) SWMFCA1791SK Brugia malayi microfilaria cDNA (SAW... 30 8.7 3
(AP002347) Homo sapiens genomic DNA, chromosome 11q, clone:C... 42 8.8 5
(AC155884) Medicago truncatula chromosome 2 clone mth2-10d10... 38 8.9 4
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 32 9.0 7
(CU856475) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 9.1 7
(AC182813) Medicago truncatula clone mth2-69k1, complete seq... 40 9.4 4
>(AY232268) Dictyostelium discoideum putative protein Roco6 (roco6)
gene, complete cds.
Length = 6684
Score = 1618 bits (816), Expect(2) = 0.0
Identities = 816/816 (100%)
Strand = Plus / Plus
Query: 1 aaattttccgtgaacaaaaattacatccaggtccaattagatcattggcattggtaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5462 aaattttccgtgaacaaaaattacatccaggtccaattagatcattggcattggtaaatc 5521
Query: 61 aagaagatatttggtcagcaggtggtattggtccacaacaaagtacaattagaatttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5522 aagaagatatttggtcagcaggtggtattggtccacaacaaagtacaattagaatttgga 5581
Query: 121 atgcttggcgttttaatcttgatgatcaatctggtacaaaatctgattttatcactaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5582 atgcttggcgttttaatcttgatgatcaatctggtacaaaatctgattttatcactaaaa 5641
Query: 181 aaggtagaggtggttcaacatttggtagaaaatcttggagattacgttggtttgtcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642 aaggtagaggtggttcaacatttggtagaaaatcttggagattacgttggtttgtcctat 5701
Query: 241 caagatttgataaaaccttgaaatactatagtaaacaaactgataaagaaccaagttgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5702 caagatttgataaaaccttgaaatactatagtaaacaaactgataaagaaccaagttgtt 5761
Query: 301 cactcattttagagggtgcttggttagaagaaattagtccaccaggttataaagttagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5762 cactcattttagagggtgcttggttagaagaaattagtccaccaggttataaagttagtc 5821
Query: 361 ttcatttaattcatccagaaaaaagaacaatggaaatggaatttaagagtgaatctgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5822 ttcatttaattcatccagaaaaaagaacaatggaaatggaatttaagagtgaatctgaaa 5881
Query: 421 aatcatcttggctaactgcaatcaatcgtgttatcaatcaaaatataccactctatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5882 aatcatcttggctaactgcaatcaatcgtgttatcaatcaaaatataccactctatgaaa 5941
Query: 481 ttgcacttggtaaacaaatgacaagtggtagtgaaaatgattatatcacaaatttactat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5942 ttgcacttggtaaacaaatgacaagtggtagtgaaaatgattatatcacaaatttactat 6001
Query: 541 cggttggtccaaatgtttgggtatcacttaaagaaacaccatcaattttggtttataatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6002 cggttggtccaaatgtttgggtatcacttaaagaaacaccatcaattttggtttataatg 6061
Query: 601 taaagagtaaagaattggttacaaaaatctctttaaatgatgatcaatccagtgatcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6062 taaagagtaaagaattggttacaaaaatctctttaaatgatgatcaatccagtgatcaat 6121
Query: 661 ggggtaaaactggtgctgtaaatatgatgttggttaataatttcgtttggataactggtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6122 ggggtaaaactggtgctgtaaatatgatgttggttaataatttcgtttggataactggtg 6181
Query: 721 gttcaaaattgactcaaattgattcacaatcttatcaactcttggaagtacatggaaatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6182 gttcaaaattgactcaaattgattcacaatcttatcaactcttggaagtacatggaaatc 6241
Query: 781 attattcaaaaccaatcacctcaatggcattggttg 816
||||||||||||||||||||||||||||||||||||
Sbjct: 6242 attattcaaaaccaatcacctcaatggcattggttg 6277
Score = 656 bits (331), Expect(2) = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus
Query: 824 tgtttggatctcttgtgaagatgaatcactttcagtttgggatggtgatactggttcctt 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6285 tgtttggatctcttgtgaagatgaatcactttcagtttgggatggtgatactggttcctt 6344
Query: 884 tattagaaaagttggttctccaattggttcaccaactaagccaaccgtttacactaaact 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345 tattagaaaagttggttctccaattggttcaccaactaagccaaccgtttacactaaact 6404
Query: 944 tttatatttcagtggttatgtttgggcttgtactcaaggttcaattcatatttattgtat 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6405 tttatatttcagtggttatgtttgggcttgtactcaaggttcaattcatatttattgtat 6464
Query: 1004 tcattcattaacttgtaaaaagaaagttgaatcaaaaaatcatccaaatagtattgtaga 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6465 tcattcattaacttgtaaaaagaaagttgaatcaaaaaatcatccaaatagtattgtaga 6524
Query: 1064 tttaattaaagttttccaacaaactgtttggtcatgttgtggtacaaataatgtttgtat 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6525 tttaattaaagttttccaacaaactgtttggtcatgttgtggtacaaataatgtttgtat 6584
Query: 1124 ttggtcttaaacaataaatttgaatttattt 1154
|||||||||||||||||||||||||||||||
Sbjct: 6585 ttggtcttaaacaataaatttgaatttattt 6615
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,529,517,915
Number of extensions: 88088855
Number of successful extensions: 7005771
Number of sequences better than 10.0: 66
Length of query: 1163
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1139
Effective length of database: 99,340,224,878
Effective search space: 113148516136042
Effective search space used: 113148516136042
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home