Dictyostelium discoideum cDNA Clone SLA454

Size:		1.3k
3' sequence:	RY970620
5' sequence:	TM990121
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SLA454

AATTTTTTAA AAAAACAAAA AAAAAATGAA TAAATTAATT ATCTCTTTAT
TAATTGTTTT ATCAGCAATC TCTATCATTT CAGCAGATTA CCAATATGGT
TATTGTAAAT TTGGTTCTGT TGGTACTGTA AATCAAAATA TTACAGGTTA
TGTTACATTA ACTGCACAAG ATGGTGCCCT TAATTTAGTT TATAATATAA
GTTCAATTAA TTTACCAACT GGTTCATATG CAACTGCAAT TATGACATAT
GGTTATAATC CATCAAATAA TACTGATTTA GGTGGTGTTT TCCAAGTTGA
TGGAAAAGGT ACAGAGCAAT GTCAATCAGG AGGTTCCAGA GCAGGTGATT
TATATAATCT CTATGTTAAT GATAATAGAA TTAGCAGCAA TTTCGATAGT
TTGACATCAG TATCAATTGT TGACTCACCA AATTCGATCA TTGGAAGATC
GATTGCAATT TTCCAAGAGT CATATTCATG TGATTTATTG AAATCATCAG
TTGGAACATC AGTTGGTCCA TTGACAACCG TTGTTGCATC ATGTATTATT
GGTATTGGTA ATTCAGCAAA TGTGCCAGCC ACCAATGGTG TTAATACAAC
CACTGGCAAT GCAAATACTG CTGGTGCCTA CTCAAGCTTA TCAAATACTC
AATATGACGC AATGGTTTTG TTGGCAAATA CCACCAAATC TCCATCTGCC
GCTATTGGA- ---------T GGTGGTCACT GGTTATCAGG CGCACAAGTC
CATGCTTTCC CAGAGAATAC ATCAAGACAT TTCGGTGATT TAGGTAATCT
TTGCATCTTT GATAACGATT TCAAAAATGC CTATTATTAT CTCTCAACTA
GTTACTTTTC ATTCTCTGGT TTAGTTGGCA GAGGTTTCGC TGTTCATGCC
GCTAGAGATG ATGGTAACAC TTATGTTGGT GGTGATCGTG TTGCTCAAGG
TGTTGTTGCT TTAATTCCAA AAGCTGCTAC AACTTTAAAT CAAGTTCCAT
CTAATTGGAA ATACGAAGTT ATCTGTTCAA ATGGTACTTA CACTGGTGAA
TCAACAATTG AACCATCACC AACTCCATCA ACAACTCCAA CTCCAACCGA
AACTTCACAA CCAGGTACTT CATCTTATCT CGCTCCATTC TTTGTTTTGA
TTTTATCTTC TTTAATTTCT GTTATTTTAA TTTTATAAAA TTATAAATAA
AAAAAAAATA AAAACAAATA AAAAAAATAA AAATTAAATA ATAACTTTTT
AAAATAAA

Translated Amino Acid Sequence SLA454

if*KNKKKMNKLIISLLIVLSAISIISADYQYGYCKFGSVGTVNQNITGYVTLTAQDGAL
NLVYNISSINLPTGSYATAIMTYGYNPSNNTDLGGVFQVDGKGTEQCQSGGSRAGDLYNL
YVNDNRISSNFDSLTSVSIVDSPNSIIGRSIAIFQESYSCDLLKSSVGTSVGPLTTVVAS
CIIGIGNSANVPATNGVNTTTGNANTAGAYSSLSNTQYDAMVLLANTTKSPSAAIG---

---GGHWLSGAQVHAFPENTSRHFGDLGNLCIFDNDFKNAYYYLSTSYFSFSGLVGRGFA
VHAARDDGNTYVGGDRVAQGVVALIPKAATTLNQVPSNWKYEVICSNGTYTGESTIEPSP
TPSTTPTPTETSQPGTSSYLAPFFVLILSSLISVILIL*nyk*kknknk*kk*klnnnfl
k*

Homology SLA454 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SLA454 (SLA454Q) /CSM/SL/SLA4-C/SLA454Q.Seq.d/                       2236   0.0
AFO340 (AFO340Q) /CSM/AF/AFO3-B/AFO340Q.Seq.d/                       1096   0.0
VFC830 (VFC830Q) /CSM/VF/VFC8-B/VFC830Q.Seq.d/                        922   0.0
VFC684 (VFC684Q) /CSM/VF/VFC6-D/VFC684Q.Seq.d/                        910   0.0
VFG659 (VFG659Q) /CSM/VF/VFG6-C/VFG659Q.Seq.d/                        880   0.0
AFG652 (AFG652Q) /CSM/AF/AFG6-C/AFG652Q.Seq.d/                        860   0.0
SLK794 (SLK794Q) /CSM/SL/SLK7-D/SLK794Q.Seq.d/                        664   0.0
FC-IC1191 (FC-IC1191Q) /CSM/FC-IC/FC-IC1191Q.Seq.d/                   626   e-178
FC-AF03 (FC-AF03Q) /CSM/FC/FC-AF/FC-AF03Q.Seq.d/                       44   0.005
VSF593 (VSF593Q) /CSM/VS/VSF5-D/VSF593Q.Seq.d/                         42   0.020

Homology SLA454 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU060155) Dictyostelium discoideum slug cDNA, clone SLA454.     1354   0.0    1
(BJ328778) Dictyostelium discoideum cDNA clone:dda29p09, 5' ...  1096   0.0    1
(BR000219) TPA_exp: Dictyostelium discoideum sodB gene for S...  1065   0.0    3
(BJ431542) Dictyostelium discoideum cDNA clone:ddv14e16, 3' ...   827   0.0    2
(BJ412061) Dictyostelium discoideum cDNA clone:ddv6g22, 5' e...   898   0.0    1
(BJ430317) Dictyostelium discoideum cDNA clone:ddv6g22, 3' e...   815   0.0    2
(C25570) Dictyostelium discoideum slug cDNA, clone SLA454.        827   0.0    1
(BJ430191) Dictyostelium discoideum cDNA clone:ddv6l08, 3' e...   827   0.0    1
(BJ413193) Dictyostelium discoideum cDNA clone:ddv14e16, 5' ...   815   0.0    1
(BJ345906) Dictyostelium discoideum cDNA clone:dda29p09, 3' ...   789   0.0    1

Homology SLA454 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   365   4e-99
(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn...   108   8e-22
CP000828_5114(CP000828|pid:none) Acaryochloris marina MBIC11017,...    54   2e-05
AB066500_1(AB066500|pid:none) Barbula unguiculata mRNA for chlor...    45   0.007
CP003029_1168(CP003029|pid:none) Rhodothermus marinus SG0.5JP17-...    45   0.009
CP000010_622(CP000010|pid:none) Burkholderia mallei ATCC 23344 c...    45   0.009
FR824191_8(FR824191|pid:none) Albugo laibachii Nc14, genomic con...    44   0.019
CP001807_1587(CP001807|pid:none) Rhodothermus marinus DSM 4252, ...    44   0.019
AF071112_1(AF071112|pid:none) Brassica rapa ssp. pekinensis cyto...    44   0.019
GU143551_1(GU143551|pid:none) Helicoverpa armigera diapause bioc...    44   0.019

Homology SLA454 vs Genome