Dictyostelium discoideum cDNA Clone SLA110

Size:		1449
3' sequence:	RY970508
5' sequence:	RY970508
Whole insert?:	Y
Accession #:	
Remarks:	*

Sequence SLA110

CAAAGATTAG AGAAAGAGTT TGGTTTGGCT GCTGGTTCAA TTCAACAATA
TCTCTCACAA TTGGATAATC CAAACAATAT GGGTAATCAA GAGGCAACTC
ATCAATTGGT TATCGAGGAT TTGGTTAATC ATTTACAACA AGCTCAACGT
TTATCCGATC TTTGTAATCA AGAGGGTGAT GATTTAGAAA TGGATATTTT
CTCTGCGGTC AATACAGTTT CAAACTCTTT GAAGAGTTTA TTCTTTGATG
CCAAGGGTTC ATCAAGATTA ATTTTAGATC CAGAGTCACA AAGTAAATTT
ATGGATGCCG CAAGAAAAAT TGGTGCTCTC ACTCAAAATC TTTTCGAATC
AATTCGACTC CAAGGTGGTC AATGTAATGA TGATGAAGAT CGTAAGAGAT
TGGCAAACAA TTTTGCTTCC CTTAAAACTG GTATCAATAA TTTGGATGCA
TTGGCTCAAC AAGCTGACGC TGAAAGAATT GAAGCCGAGA AGAAATATTT
AGAGAATGGT TTTGATTTGG ATGATGTTGC TGAACGTGAA CTATTGGCTG
CCGCTAAAAC CATTGAAGAT GCTGCAAACT CATTATTGGC CGCAAAATCA
AAGAGTCGTA AGAGATTGGC AAACAATTTT GCTTCCCTTA AAACTGGTAT
CAATAATTTG GATGCATTGG CTCAACAAGC TGACGCTGAA AGAATTGAAG
CCGAGAAGAA ATATTTAGAG AATGGTTTTG ATTTGGATGA TGTTGCTGAA
CGTGAACTAT TGGCTGCCGC TAAAACCATT GAAGATGCTG CAAACTCATT
ATTGGCCGCA AAATCAAAGA GGAGCTCCAA AGAAGGAGGG TGATTCACCA
GATGTTGCTG AGGCAATCCT TGAGGCTGCT ATGGCAATCA CTGGTGCTAC
TTCCACATTG GTTGGTGCCG CCACTTTAGC ACAAAGAGAA CGTGTCGAAA
AGGGTAGAAC AAGTGATGGT GGTCCACTCT ATAGAAAGGA TCCAACTTGG
GCTGAAGGTT TAATCTCTGC TGCAAAATCT GTTGCCCAAG CCACTAAAGC
TTTGGTAGAT AATGCCAACA AGACAGCATC TGGTCAAGAG ATCCCAGGTG
GTACAGAAGA AGCTCTCATT GCCAACTTCG ATGGCTGTAA CTGCTGCAAC
TTCTCAATTG GTCTCTGCTT GTAAATCTAA ATCTGATATC AATAGTCCTT
CTCAACATAA ACTTTCAAAT GCTGCCAAAT CCGTATCCAA TGCAACCAAT
CTTTTAGTGG CTGCAGCCAA AGCTGTCGCT GCTAAAGTCG CCTCTGAAGA
GGATATCGAT TTCGATAAAC TCACTGTCAC TGGTTATAAA GTTAAAGAAA
TGGAACAACA AATGGCAATT CTCAGATTAG AAAAAGAATT AGAAGTCGCT
AGAAAAGGTT TAAGTGTTAT TAGAAAGAAA CAATATGACG AAAATCAAT

Translated Amino Acid Sequence SLA110

QRLEKEFGLAAGSIQQYLSQLDNPNNMGNQEATHQLVIEDLVNHLQQAQRLSDLCNQEGD
DLEMDIFSAVNTVSNSLKSLFFDAKGSSRLILDPESQSKFMDAARKIGALTQNLFESIRL
QGGQCNDDEDRKRLANNFASLKTGINNLDALAQQADAERIEAEKKYLENGFDLDDVAERE
LLAAAKTIEDAANSLLAAKSKSRKRLANNFASLKTGINNLDALAQQADAERIEAEKKYLE
NGFDLDDVAERELLAAAKTIEDAANSLLAAKSKRSSKEGG*ftrcc*gnp*gcygnhwcy
fhigwcrhfstkrtcrkg*nk*wwstl*kgsnlg*rfnlcckiccpsh*sfgr*cqqdsi
wsrdprwyrrsshcqlrwl*llqllnwsllvnlnlisivllninfqmlpnpypmqpif*w
lqpklsllksplkrisisinslslviklkkwnnkwqfsd*kkn*kslekv*vllernnmt
kin

Homology SLA110 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SLA110 (SLA110Q) /CSM/SL/SLA1-A/SLA110Q.Seq.d/                       2872   0.0
VFO311 (VFO311Q) /CSM/VF/VFO3-A/VFO311Q.Seq.d/                       1556   0.0
SHA557 (SHA557Q) /CSM/SH/SHA5-C/SHA557Q.Seq.d/                       1540   0.0
CHS178 (CHS178Q) /CSM/CH/CHS1-D/CHS178Q.Seq.d/                       1540   0.0
SHA409 (SHA409Q) /CSM/SH/SHA4-A/SHA409Q.Seq.d/                       1538   0.0
CHR147 (CHR147Q) /CSM/CH/CHR1-B/CHR147Q.Seq.d/                       1538   0.0
SHK510 (SHK510Q) /CSM/SH/SHK5-A/SHK510Q.Seq.d/                       1536   0.0
CHI561 (CHI561Q) /CSM/CH/CHI5-C/CHI561Q.Seq.d/                       1536   0.0
CHR474 (CHR474Q) /CSM/CH/CHR4-D/CHR474Q.Seq.d/                       1534   0.0
CHN144 (CHN144Q) /CSM/CH/CHN1-B/CHN144Q.Seq.d/                       1534   0.0

Homology SLA110 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U14576|U14576.2 Dictyostelium discoideum filopodin (talA) ge...    56   0.001  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma...    32   0.39   12
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             32   0.81   29
BX890538|BX890538.1 Mouse DNA sequence *** SEQUENCING IN PRO...    46   1.4    1
AL844886|AL844886.3 Mouse DNA sequence from clone RP23-464F7...    46   1.4    1
AL627255|AL627255.24 Zebrafish DNA sequence *** SEQUENCING C...    42   4.1    3
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clon...    40   4.2    8
BH167088|BH167088.1 ENTQT91TR Entamoeba histolytica Sheared ...    34   4.5    3
AL589844|AL589844.4 Human DNA sequence from clone RP11-436F2...    36   4.7    11
BM284459|BM284459.1 ki59a08.y1 Ascaris suum male gut SL1 TOP...    44   5.4    1

Homology SLA110 vs Protein

Sequences producing significant alignments:                      (bits) Value


A57036(A57036)talin - slime mold (Dictyostelium discoideum)            75   3e-26
HQ244436_1(HQ244436|pid:none) Erysiphe necator cytoskeleton asse...    71   2e-24
AE017345_306(AE017345|pid:none) Cryptococcus neoformans var. neo...    71   5e-24
CP000290_297(CP000290|pid:none) Cryptococcus gattii WM276 chromo...    71   9e-24
FJ798800_1(FJ798800|pid:none) Microsporum gypseum strain ATCC 58...    72   2e-23
EF107688_1(EF107688|pid:none) Emericella nidulans SlaB (slaB) ge...    74   2e-23
CP000501_90(CP000501|pid:none) Scheffersomyces stipitis CBS 6054...    69   2e-23
CU329670_1335(CU329670|pid:none) Schizosaccharomyces pombe chrom...    71   2e-23
(Q9P6L5) RecName: Full=Endocytosis protein end4; AltName: Full=S...    71   2e-23
D89267_1(D89267|pid:none) Schizosaccharomyces pombe mRNA, partia...    71   2e-23

Homology SLA110 vs Genome