Homology SHL704 vs Protein
Query= SHL704 (SHL704Q) /CSM/SH/SHL7-A/SHL704Q.Seq.d/
(968 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54MH2) RecName: Full=Probable vinculin; 283 1e-74
(P12003) RecName: Full=Vinculin; AltName: Full=Metavinculin; 63 3e-08
A29997(A31346;S03973;A27884;S39759;S32807;S65691;A29997)meta-vin... 63 3e-08
BC127288_1(BC127288|pid:none) Xenopus tropicalis hypothetical pr... 63 3e-08
GQ327928_1(GQ327928|pid:none) Meleagris gallopavo vinculin mRNA,... 63 3e-08
(O46037) RecName: Full=Vinculin; &AE014298_404(AE014298|pid:non... 62 4e-08
(Q64727) RecName: Full=Vinculin; AltName: Full=Metavinculin; &B... 62 5e-08
(P85972) RecName: Full=Vinculin; AltName: Full=Metavinculin; 62 5e-08
AX253482_1(AX253482|pid:none) Sequence 29 from Patent WO0171356. 62 5e-08
AF165172_1(AF165172|pid:none) Sus scrofa vinculin mRNA, complete... 62 5e-08
BC008554_1(BC008554|pid:none) Mus musculus vinculin, mRNA (cDNA ... 62 5e-08
L18880_1(L18880|pid:none) Mus musculus vinculin mRNA, complete c... 62 5e-08
AL731576_2(AL731576|pid:none) Human DNA sequence from clone RP11... 62 5e-08
AK035184_1(AK035184|pid:none) Mus musculus 12 days embryo embryo... 62 5e-08
BC039174_1(BC039174|pid:none) Homo sapiens vinculin, mRNA (cDNA ... 62 5e-08
S29507(S29507;S01154)metavinculin - pig (fragments) 62 5e-08
AB385172_1(AB385172|pid:none) Synthetic construct DNA, clone: pF... 62 5e-08
(P26234) RecName: Full=Vinculin; AltName: Full=Metavinculin; 62 5e-08
FQ310507_337(FQ310507|pid:none) Dicentrarchus labrax chromosome ... 61 8e-08
(Q17162) RecName: Full=Vinculin; &U07023_1(U07023|pid:none) 52 6e-05
BC161685_1(BC161685|pid:none) Xenopus laevis alpha(E)-catenin, m... 50 1e-04
AK304267_1(AK304267|pid:none) Homo sapiens cDNA FLJ54047 complet... 50 2e-04
AK296708_1(AK296708|pid:none) Homo sapiens cDNA FLJ54052 complet... 50 2e-04
(Q3MHM6) RecName: Full=Catenin alpha-1; &BC105180_1(BC105180|pi... 50 2e-04
BC031262_1(BC031262|pid:none) Homo sapiens catenin (cadherin-ass... 50 2e-04
FN357710_12(FN357710|pid:none) Schistosoma mansoni genome sequen... 50 2e-04
BC155815_1(BC155815|pid:none) Danio rerio catenin (cadherin-asso... 50 2e-04
HE601625_87(HE601625|pid:none) Schistosoma mansoni strain Puerto... 50 2e-04
AF099737_1(AF099737|pid:none) Danio rerio cell-adhesion protein ... 50 2e-04
U34687_1(U34687|pid:none) Lytechinus variegatus alpha catenin mR... 49 4e-04
AK289756_1(AK289756|pid:none) Homo sapiens cDNA FLJ78082 complet... 49 4e-04
BC112409_1(BC112409|pid:none) Mus musculus catenin (cadherin ass... 49 5e-04
FO080772_3(FO080772|pid:none) Caenorhabditis elegans Cosmid ZC47... 49 5e-04
(P19826) RecName: Full=Vinculin; AltName: Full=P107B; &FO080772... 49 5e-04
(Q65CL1) RecName: Full=Catenin alpha-3; AltName: Full=Alpha T-ca... 49 5e-04
L23805_1(L23805|pid:none) Human alpha1(E)-catenin mRNA, complete... 48 7e-04
D14705_1(D14705|pid:none) Homo sapiens mRNA for alpha-catenin, c... 48 7e-04
BX537769_1(BX537769|pid:none) Homo sapiens mRNA; cDNA DKFZp781B1... 48 0.001
BC040458_1(BC040458|pid:none) Homo sapiens catenin (cadherin-ass... 48 0.001
AK303035_1(AK303035|pid:none) Homo sapiens cDNA FLJ59799 complet... 48 0.001
AK295493_1(AK295493|pid:none) Homo sapiens cDNA FLJ53997 complet... 48 0.001
(B7ZC77) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 48 0.001
(P30997) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 48 0.001
AK294362_1(AK294362|pid:none) Homo sapiens cDNA FLJ58486 complet... 46 0.003
JC2542(JC2542) alpha-2(E)-catenin - human &U03100_1(U03100|pid:... 39 0.43
AC008067_1(AC008067|pid:none) Homo sapiens BAC clone RP11-303I4 ... 37 1.2
(Q53T67) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 37 1.2
AY650344_1(AY650344|pid:none) Macaca fascicularis catenin alpha-... 37 1.2
(Q6GLP0) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 37 1.2
A45011(A45011)alpha-catenin 2 - human 37 1.2
(Q61301) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 37 1.2
(A4IGI7) RecName: Full=Catenin alpha-2; AltName: Full=Alpha N-ca... 37 2.1
>(Q54MH2) RecName: Full=Probable vinculin;
Length = 842
Score = 283 bits (724), Expect = 1e-74
Identities = 146/159 (91%), Positives = 146/159 (91%)
Frame = +1
Query: 475 PKLVVPEGPVNKXXXXXXXXXXXXLESKVRDGTPLGILVQLSDEIAQQMALIASFAMNGD 654
PKLVVPEGPVNK LESKVRDGTPLGILVQLSDEIAQQMALIASFAMNGD
Sbjct: 680 PKLVVPEGPVNKAVFGAAADVAQALESKVRDGTPLGILVQLSDEIAQQMALIASFAMNGD 739
Query: 655 VKGMITAARKIADTIKQVQTQAKHIADNCTDPRLKQNVLTYCDCGGNFSTQLKILCAVKS 834
VKGMITAARKIADTIKQVQTQAKHIADNCTDPRLKQNVLTYCDCGGNFSTQLKILCAVKS
Sbjct: 740 VKGMITAARKIADTIKQVQTQAKHIADNCTDPRLKQNVLTYCDCGGNFSTQLKILCAVKS 799
Query: 835 NDFNDPTAEEQLVTCAKGLSGAVINLVKSSEAASIKQXK 951
NDFNDPTAEEQLVTCAKGLSGAVINLVKSSEAASIKQ K
Sbjct: 800 NDFNDPTAEEQLVTCAKGLSGAVINLVKSSEAASIKQRK 838
Score = 35.4 bits (80), Expect = 4.7
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 229 VKEASSNLSQVIQPTAD 279
VKEASSNLSQVIQPTAD
Sbjct: 598 VKEASSNLSQVIQPTAD 614
Lambda K H
0.317 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,522,349,492
Number of extensions: 25203430
Number of successful extensions: 57356
Number of sequences better than 10.0: 52
Number of HSP's gapped: 57333
Number of HSP's successfully gapped: 53
Length of query: 322
Length of database: 1,732,582,204
Length adjustment: 132
Effective length of query: 190
Effective length of database: 1,026,486,088
Effective search space: 195032356720
Effective search space used: 195032356720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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