Dictyostelium discoideum cDNA Clone SHL704

Sequence SHL704

GGATTTTTTT TTTCACTGAT AAATTATATT ATTTATTTAT TTATTTTTTA
CATTTAAATA TTAACAATAA AAAAAACATA TTCTACATAT TTTTATTTTT
TTCATAGCAA TAAATTAGTC AACTTTTTTT AAAAATTTAA AAANGGTNTN
TAAAAAAAAA AAACCNCAAA ATCCCAAAAN NACCCAATTT TAAAAAAAAN
NAAANTAAAA AANNAA---- ------GAGT TAAAGAAGCA AGTAGTAATC
TTAGTCAAGT CATTCAACCA ACTGCTGATG AACTTAAAGA AGAAAAGAGA
AAGAGAAATG AAGAGATTGC AAGAATTGAA GCAGAGGAAA AAGCAAAAGC
TCGTGCCTTA TTAAAAGCTG CTGAATTGGC AAGAATTGAA GCAGAGGAAG
AAAAGAAACG TTTGGCTATA ATTGAAGAAG AAAAGAAACG TTTAGCTGCA
GAGGAAGAGG AAAGAAAACG TGCTCCAAAA CTCGTCGTTC CAGAAGGTCC
AGTTAATAAA GCAGTTTTCG GTGCTGCCGC TGATGTCGCT CAAGCTTTAG
AATCAAAAGT TCGTGATGGT ACACCATTGG GTATACTCGT TCAATTATCC
GACGAAATCG CTCAACAAAT GGCTTTAATC GCAAGTTTCG CAATGAATGG
TGATGTTAAA GGTATGATTA CTGCTGCTCG TAAAATCGCA GATACCATCA
AACAAGTTCA AACTCAAGCT AAACATATCG CTGACAATTG CACTGATCCA
CGTTTAAAAC AAAATGTTTT AACCTATTGC GATTGTGGTG GTAATTTCAG
TACCCAACTT AAAATCCTTT GCGCCGTTAA ATCAAATGAT TTTAATGATC
CAACCGCTGA AGAACAATTA GTTACTTGTG CTAAAGGTTT ATCAGGTGCT
GTAATTAATC TTGTAAAATC TTCTGAAGCT GCATCAATTA AACAAAGNAA
AAGTACCACA ACAATAAA

Translated Amino Acid Sequence SHL704

iffftdklyylfiyflhlninnkknifyiflffs*q*isqlflki*KXXXKKKNXKIPKX
PNFKKXXXKKX---

---VKEASSNLSQVIQPTADELKEEKRKRNEEIARIEAEEKAKARALLKAAELARIEAEE
EKKRLAIIEEEKKRLAAEEEERKRAPKLVVPEGPVNKAVFGAAADVAQALESKVRDGTPL
GILVQLSDEIAQQMALIASFAMNGDVKGMITAARKIADTIKQVQTQAKHIADNCTDPRLK
QNVLTYCDCGGNFSTQLKILCAVKSNDFNDPTAEEQLVTCAKGLSGAVINLVKSSEAASI
KQXKSTTTI

Homology SHL704 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHL704 (SHL704Q) /CSM/SH/SHL7-A/SHL704Q.Seq.d/                       1221   0.0
AHN714 (AHN714Q) /CSM/AH/AHN7-A/AHN714Q.Seq.d/                       1221   0.0
AHE835 (AHE835Q) /CSM/AH/AHE8-B/AHE835Q.Seq.d/                       1221   0.0
AHL208 (AHL208Q) /CSM/AH/AHL2-A/AHL208Q.Seq.d/                       1219   0.0
AHH249 (AHH249Q) /CSM/AH/AHH2-C/AHH249Q.Seq.d/                       1211   0.0
AHE467 (AHE467Q) /CSM/AH/AHE4-C/AHE467Q.Seq.d/                       1211   0.0
AHD320 (AHD320Q) /CSM/AH/AHD3-A/AHD320Q.Seq.d/                       1211   0.0
AHL395 (AHL395Q) /CSM/AH/AHL3-D/AHL395Q.Seq.d/                       1207   0.0
AHP403 (AHP403Q) /CSM/AH/AHP4-A/AHP403Q.Seq.d/                       1197   0.0
AHM139 (AHM139Q) /CSM/AH/AHM1-B/AHM139Q.Seq.d/                       1197   0.0

Homology SHL704 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AV408295|AV408295.1 Lotus japonicus cDNA clone:MWL038g09_r, ...    36   0.006  2
AG279695|AG279695.1 Mus musculus molossinus DNA, clone:MSMg0...    38   0.022  2
AZ540454|AZ540454.1 ENTDF66TF Entamoeba histolytica Sheared ...    40   0.022  2
AZ529180|AZ529180.1 ENTCE59TR Entamoeba histolytica Sheared ...    40   0.022  2
AZ669217|AZ669217.1 ENTFV38TR Entamoeba histolytica Sheared ...    40   0.022  2
AL459772|AL459772.1 T. brucei sheared genomic DNA clone 76h1...    50   0.11   1
AC159432|AC159432.1 Trypanosoma brucei chromosome 5 clone RP...    50   0.11   1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    38   0.23   6
AW602525|AW602525.1 RC5-BT0562-200100-031-D05 BT0562 Homo sa...    36   0.33   2
AW602513|AW602513.1 RC5-BT0562-180100-031-D05 BT0562 Homo sa...    36   0.33   2

Homology SHL704 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54MH2) RecName: Full=Probable vinculin;                             283   1e-74
(P12003) RecName: Full=Vinculin; AltName: Full=Metavinculin;           63   3e-08
A29997(A31346;S03973;A27884;S39759;S32807;S65691;A29997)meta-vin...    63   3e-08
BC127288_1(BC127288|pid:none) Xenopus tropicalis hypothetical pr...    63   3e-08
GQ327928_1(GQ327928|pid:none) Meleagris gallopavo vinculin mRNA,...    63   3e-08
(O46037) RecName: Full=Vinculin;  &AE014298_404(AE014298|pid:non...    62   4e-08
(Q64727) RecName: Full=Vinculin; AltName: Full=Metavinculin;  &B...    62   5e-08
(P85972) RecName: Full=Vinculin; AltName: Full=Metavinculin;           62   5e-08
AX253482_1(AX253482|pid:none) Sequence 29 from Patent WO0171356.       62   5e-08
AF165172_1(AF165172|pid:none) Sus scrofa vinculin mRNA, complete...    62   5e-08

Homology SHL704 vs Genome