Dictyostelium discoideum cDNA Clone SHL629

Sequence SHL629

ATATATTTTT NATTTTATTA AAATTAATAA TATATAATAT ATAATATATA
TATTACTTTT ACTAATATAT ATTTTTTTAA TTTAAAAAAA TGTTAATAAA
TAAAATTTTA TTTTTATTTT TTATTCTATC ACTAACAATA TTTAATATTG
TTGATGCTGG TTATACTTTA TCTGTTAAAG GAAAAAAGTT AATATATACT
GGTGCCAATG TAGATTTCAA AATTACTGAA ATTTTGTTAA CTTCCCAAAA
AATATTACCA GATTACTCAA TTACATTCAC TTGTGAAATT CCATCTGCCA
ATAGCCCTGT TTGTACGAGT ATGGATATGG ACTTTACAAA ATTAGCTGGA
AAATTAACTC TAAGGGGAGC AAATTTAAAA ACCCCAAATA TAGTAATTGC
CTATGATATT AAAGCCAATC AAATTCCACT ACCATTACCA ACTGAGGTTA
AATGGGAACC ACCAACAATG GCTGGTACAG CTGCTCTTAT GACTGGAGAT
TTCTTATTAT TTGGTGAAGA TGTTACAACT CTTCCTGGTG TTTACAATTC
AAAACCAGTG TCATTGGGTG TTTCATCAAA TACTGACGCA ACCAAAATAA
TGGTTAAAAG TCCA------ ----TGGATC AACTGTGACA ATTAAAGGTT
CATTNTTTAA TAAAAAGGAC ACTGGTTTGA AAATTATGGT TGGAAATCAT
TCATGTGATT CTTTGACTAT TGTAGATACC CAAACACTTA CTTGNTCTGC
TCCNCCAGGA AGTGGTATTA AAAATGNTGT TTCATTCATG GTTAAAGATG
CTGAATCAAA ATTATCNCCN CCATTGTTTT TAGATTATAG TCCNCCAACC
ATTATGTCAT CAACAAGTGT AAAACAAGTT GAAGGTGGTC AAGTTACTAT
TTATGGTACC AATTTTGAAA ATACTTTGAT TACAGTAAAT GTTGGAAGTA
AATCATGTGA ANATGNTTNT GTAATAGATT CAACCAAACT TACTTGTTCA
ATTTCAAAAT CAACAATAGA TCCTTCATTA ACAAATAANA AATTGGCCGT
AAATGTTACT GTAAATGGTC NATTTGNTAA TGGTNAAGTA TTTGAATATG
ATAATGAAGC NCTCAATACT GAAACTCCTA AACCAACATT AGCNCCAACT
ATAAAACCAA CTGAAAAACC AACTGAAAAA CCAACTGAAA AACCAACAAC
ATCTCCAATA GATAAACNCA TTGAAAATAG TTCTTCTAAA ATTTCTAATT
CNTTAATTTT AATTT

Translated Amino Acid Sequence SHL629

ifxillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSKPVSLGVSSNTDATKIMVKSP---

---GSTVTIKGSXFNKKDTGLKIMVGNHSCDSLTIVDTQTLTXSAPPGSGIKNXVSFMVK
DAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVGSKSCEXXXVI
DSTKLTCSISKSTIDPSLTNXKLAVNVTVNGXFXNGXVFEYDNEALNTETPKPTLAPTIK
PTEKPTEKPTEKPTTSPIDKXIENSSSKISNSLILI

Homology SHL629 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/                       1875   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        975   0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/                        975   0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/                        975   0.0
SHL114 (SHL114Q) /CSM/SH/SHL1-A/SHL114Q.Seq.d/                        975   0.0
SHK752 (SHK752Q) /CSM/SH/SHK7-C/SHK752Q.Seq.d/                        975   0.0
SHK674 (SHK674Q) /CSM/SH/SHK6-D/SHK674Q.Seq.d/                        975   0.0
SHK612 (SHK612Q) /CSM/SH/SHK6-A/SHK612Q.Seq.d/                        975   0.0
SHK546 (SHK546Q) /CSM/SH/SHK5-B/SHK546Q.Seq.d/                        975   0.0
SHK341 (SHK341Q) /CSM/SH/SHK3-B/SHK341Q.Seq.d/                        975   0.0

Homology SHL629 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...    38   0.28   8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    32   1.1    16
AC167674|AC167674.2 Bos taurus clone CH240-196I16, *** SEQUE...    46   2.1    1
AC167580|AC167580.2 Bos taurus clone CH240-203N8, *** SEQUEN...    46   2.1    1
CZ518228|CZ518228.1 GMW2-73G17a.b1 GMW2 Glycine max genomic,...    46   2.1    1
AC188200|AC188200.1 Zea mays chromosome UNKNOWN clone ZMMBBb...    44   2.8    4
DY895079|DY895079.1 CeleSEQ14806 Cunninghamella elegans pBlu...    44   8.1    1
CK295567|CK295567.1 EST758281 Nicotiana benthamiana mixed ti...    44   8.1    1
AC189077|AC189077.1 Zea mays chromosome 9 clone CH201-11M20;...    44   8.1    1
AC126969|AC126969.3 Rattus norvegicus clone CH230-197P4, ***...    44   8.1    1

Homology SHL629 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    64   2e-08
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    51   2e-04
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    47   0.002
CP002480_2124(CP002480|pid:none) Granulicella sp. MP5ACTX9, comp...    47   0.002
CP002345_2101(CP002345|pid:none) Paludibacter propionicigenes WB...    46   0.004
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ...    43   0.033
EU643473_4(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep...    43   0.033
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    43   0.044
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...    42   0.057
AP012206_5165(AP012206|pid:none) Bradyrhizobium japonicum USDA 6...    40   0.28

Homology SHL629 vs Genome