Dictyostelium discoideum cDNA Clone SHL552

Sequence SHL552

---------- GTCTCAATCA ACNAATATTC AATGGTGTCA TTCCAAAGAA
NCCAATGATC ATTGGTATCG ATGTTGGTCA TAACTCTGAT ATGAGAGGTC
ATTCAGTAGT TGGATTCGTT GCAACTATCG ATGATAAATT TCAAAAGTAT
TTCTCAAGAT CTTTTGTTCA AAAGCGTCCT GGTAAAGAAA TCATTGATTC
TCTTGAAGAA GCAACTAAAG AAGCAATGTC AAAATATTTT AGTTTCAATA
ATTGTTTACC GGAATTGGTT ATAGTTTATC GTGATGGTGT TGGTGATGGT
ATGTTAGATC TTGTCAATAG ATCTGAAATT GCTGCAATGA AAAAAGGTTT
TGNTGAAACA CCATCTTCTT GGGGTATAAA ACCAAAGTTA ATGTATGTCA
TTGTCAAAAA GAATACAAAT GCACGTTTAT TTACTGCTGA TCCAANTGGT
AATCCTCCAG CTGGTACTTT GGTTGACTCA AAAATTACCC ATCCAAATTG
GTATGATTTC TTTTTAGTCT CTCAAGTAAC TAACAATGGT TCTGTCAATC
CAACTCATTA TCACGTTTTA TTGGATGAAC AAAAAATGCC TGCTGATTTA
TTTCAATTAT TTACTTTCCA AATGTGTCAT CTTTATTTCA ACTTTGAAAA
ATCTGTTCGT GTTCCAGCAA CTTGTCAATT TGCACACAAA ATGGCATTTT
TAATTGGTAG AACAGTTTTC GCTGATGCTG CGCCTCAATT ATACAGATAA
ATTATTCTTN CCTTTAAATT

Translated Amino Acid Sequence SHL552

---LNQXIFNGVIPKXPMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSRSFVQKRPG
KEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAMKKGFXETP
SSWGIKPKLMYVIVKKNTNARLFTADPXGNPPAGTLVDSKITHPNWYDFFLVSQVTNNGS
VNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAFLIGRTVFA
DAAPQLYR*iilxfk

Homology SHL552 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHL552 (SHL552Q) /CSM/SH/SHL5-C/SHL552Q.Seq.d/                       1477   0.0
AHE388 (AHE388Q) /CSM/AH/AHE3-D/AHE388Q.Seq.d/                       1439   0.0
CHL541 (CHL541Q) /CSM/CH/CHL5-B/CHL541Q.Seq.d/                       1435   0.0
AHC315 (AHC315Q) /CSM/AH/AHC3-A/AHC315Q.Seq.d/                       1435   0.0
CHS352 (CHS352Q) /CSM/CH/CHS3-C/CHS352Q.Seq.d/                       1433   0.0
CHG488 (CHG488Q) /CSM/CH/CHG4-D/CHG488Q.Seq.d/                       1433   0.0
AHL458 (AHL458Q) /CSM/AH/AHL4-C/AHL458Q.Seq.d/                       1433   0.0
CHL307 (CHL307Q) /CSM/CH/CHL3-A/CHL307Q.Seq.d/                       1429   0.0
SHD895 (SHD895Q) /CSM/SH/SHD8-D/SHD895Q.Seq.d/                       1425   0.0
CHE784 (CHE784Q) /CSM/CH/CHE7-D/CHE784Q.Seq.d/                       1425   0.0

Homology SHL552 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 ma...   283   e-153  5
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 ma...    54   2e-13  6
AC156903|AC156903.2 Bos taurus clone CH240-60N10, *** SEQUEN...    52   0.020  1
AC111348|AC111348.6 Rattus norvegicus clone CH230-244C8, WOR...    42   0.033  6
AC069535|AC069535.15 Mus musculus chromosome 7 clone RP23-45...    48   0.17   2
AC127007|AC127007.3 Rattus norvegicus clone CH230-342K24, **...    48   0.31   1
AC124032|AC124032.4 Rattus norvegicus clone CH230-243H23, **...    48   0.31   1
AC122584|AC122584.4 Rattus norvegicus clone CH230-50H22, ***...    48   0.31   1
AC134332|AC134332.2 Mus musculus BAC clone RP24-385N13 from ...    48   0.31   1
AC151574|AC151574.2 Mus musculus BAC clone RP23-430A4 from 7...    48   0.31   1

Homology SHL552 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116924_18(AC116924|pid:none) Dictyostelium discoideum chromoso...   395   e-108
AB533506_1(AB533506|pid:none) Ephydatia fluviatilis EfPiwiB mRNA...   202   1e-50
AB455103_1(AB455103|pid:none) Botryllus primigenus BpPiwi mRNA f...   199   1e-49
(A6N7Y9) RecName: Full=Piwi-like protein 1;  &EF619343_1(EF61934...   199   2e-49
GU076092_1(GU076092|pid:none) Saccoglossus kowalevskii piwi-like...   199   2e-49
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ...   196   1e-48
AY493987_1(AY493987|pid:none) Podocoryne carnea Cniwi (Cniwi) mR...   192   2e-47
HM749787_1(HM749787|pid:none) Coturnix coturnix piwi-like protei...   191   5e-47
AB372007_1(AB372007|pid:none) Bombyx mori BmAGO3 mRNA for AGO3, ...   189   1e-46
HQ012500_1(HQ012500|pid:none) Macaca mulatta piwi like-1 protein...   187   4e-46

Homology SHL552 vs Genome