Dictyostelium discoideum cDNA Clone SHK293

Sequence SHK293

CTGTTGGCCT ACTGGNATTA GTTTTTCCTT TGCCAATACA ATAAATAATA
TTAATCATAT TTTTTGAACC TTTTTTTAAT TGAATAAAAA GTTATGAATA
TCAAAAATTC AACAAATAGT TTAACAAACG AAGATATCAA CACCACTAAT
AATACCAACA ACCAACCAAG CGACAGCAAT AATAATAATA CTAGTAATAT
TAATAGCAGT AGCAGTCAAG TACCATCATC ATCATCACCA CCACTACCAC
CGCAACAACA ACAACAATTA TTACCACCAT CAGCAATTCG TCAATCACAA
TCACACATAC CAAAACAAAC ATCATTTCAC GATTTTAATC TTTGTCACAA
TCCACATAAT GAGATTAACC CATTTGCAGA CACCTCAAAT AACCCAAACA
ATGGAGCCAG TGGTAGTGGA AATCCAATGT CAAAGAGTGG AGGCTTGTCT
AAAAGCAGAT CTGGATCTCA ACATGAGATT GAATTGGGCT CCTCTAGTTC
CAACTTAAAA AAGTCCAAAT CAATGGAAAG TGTAGAATTT ATTACCGAAC
CTCAAATTCC ACTTTACTAT TCAATGGTAA AAGAAAAGG- ---------A
GGCAATTCCA TTCTTTTGTT TCTTTGTACT TCCAAATGCC AGTAGCTTTA
TCAGGTATTT TAATTCTTTG TATAGATTTG GGTACTGATC TTATTCCTGT
AATATCTTAT GCATACGAAG GTAGTGAAAC TGATCTCATG AAAAGAAAAC
CAAGAAATGT TAAAAAAGAT AAATTGGTTA GTCTTAGATT GGCTATTTTC
TCTTATCTCT GGTTAGGTTG TTGGCAATGT GCTGCTGGTT TCTTAAATTA
TTTCCTCCTT TTCAAGGATT ATGGATATAG TGCTTCCGAC CTTTACAATG
TTTCCTCTAC CTATTTCAAG AAAGATGCTC CACTTTATGG AGGTCATGAT
GATGCTAAAC AAATTCAAAT TTTAAATGAA GCTCAAACTG CATATTTCAT
CGCGATTGTA ATAAGTAGAG TTGGGGCTTG TTTCTGCGCT AAAACTAGAA
TCATTTCAAT TTTCCAACAA GGTTTCGGTA ATATGGTATT CAATTTCGGT
GTTTGTTCTA TGCTTGCCAT TGCTCTATTC ATTGTTCATG TACCAGGTGT
TAGAACTTTC TTTGGTTGTA CTATTGTCAG TTATAAATAT TGGTTAATTC
CAATTCCTTT TGCTGTATTT TTGGTTGCAT CAAATGAATT GAGACTTTGG
TTAATAAGAA GATATCCAAA GTCTACATTT GCTAATCTTT GTGCTGGTAA
ATTAAATTAA AATAATATAA TAAATATAAA TA

Translated Amino Acid Sequence SHK293

llaywx*fflcqynk*y*syflnlflie*KVMNIKNSTNSLTNEDINTTNNTNNQPSDSN
NNNTSNINSSSSQVPSSSSPPLPPQQQQQLLPPSAIRQSQSHIPKQTSFHDFNLCHNPHN
EINPFADTSNNPNNGASGSGNPMSKSGGLSKSRSGSQHEIELGSSSSNLKKSKSMESVEF
ITEPQIPLYYSMVKEK---

---RQFHSFVSLYFQMPVALSGILILCIDLGTDLIPVISYAYEGSETDLMKRKPRNVKKD
KLVSLRLAIFSYLWLGCWQCAAGFLNYFLLFKDYGYSASDLYNVSSTYFKKDAPLYGGHD
DAKQIQILNEAQTAYFIAIVISRVGACFCAKTRIISIFQQGFGNMVFNFGVCSMLAIALF
IVHVPGVRTFFGCTIVSYKYWLIPIPFAVFLVASNELRLWLIRRYPKSTFANLCAGKLN*
nniinin

Homology SHK293 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHK293 (SHK293Q) /CSM/SH/SHK2-D/SHK293Q.Seq.d/                       2464   0.0
SLB248 (SLB248Q) /CSM/SL/SLB2-B/SLB248Q.Seq.d/                       1364   0.0
SHD890 (SHD890Q) /CSM/SH/SHD8-D/SHD890Q.Seq.d/                       1364   0.0
SHA628 (SHA628Q) /CSM/SH/SHA6-B/SHA628Q.Seq.d/                       1364   0.0
AHB320 (AHB320Q) /CSM/AH/AHB3-A/AHB320Q.Seq.d/                       1360   0.0
AHE453 (AHE453Q) /CSM/AH/AHE4-C/AHE453Q.Seq.d/                       1356   0.0
VFC718 (VFC718Q) /CSM/VF/VFC7-A/VFC718Q.Seq.d/                       1352   0.0
AHJ887 (AHJ887Q) /CSM/AH/AHJ8-D/AHJ887Q.Seq.d/                       1326   0.0
SHB228 (SHB228Q) /CSM/SH/SHB2-B/SHB228Q.Seq.d/                       1243   0.0
SHD829 (SHD829Q) /CSM/SH/SHD8-B/SHD829Q.Seq.d/                       1187   0.0

Homology SHK293 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 ma...    48   1e-07  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 ma...    44   3e-07  4
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 ma...    44   4e-07  4
AC123513|AC123513.1 Dictyostelium discoideum strain AX4 chro...    46   2e-06  4
AC164630|AC164630.6 Mus musculus 10 BAC RP23-153M4 (Roswell ...    54   2e-06  2
AC112843|AC112843.4 Rattus norvegicus clone CH230-134O11, WO...    66   2e-06  1
AC095336|AC095336.7 Rattus norvegicus clone CH230-121C8, ***...    52   2e-06  6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...    46   7e-06  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    44   7e-06  3
AC132610|AC132610.3 Mus musculus BAC clone RP23-374N15 from ...    52   8e-06  2

Homology SHK293 vs Protein

Sequences producing significant alignments:                      (bits) Value


HB975106_1(HB975106|pid:none) Sequence 107781 from Patent EP2096...   150   1e-34
T18717(T18717) hypothetical protein B0365.3 - Caenorhabditis ele...   150   1e-34
JI165174_1(JI165174|pid:none) TSA: Ascaris suum ASCF_954_3805 mR...   145   5e-33
JI165276_1(JI165276|pid:none) TSA: Ascaris suum ASCF_1029_3705 m...   145   5e-33
JI166042_1(JI166042|pid:none) TSA: Ascaris suum ASCP_642_3142 mR...   145   7e-33
(P54708) RecName: Full=Potassium-transporting ATPase alpha chain...   142   3e-32
(Q13733) RecName: Full=Sodium/potassium-transporting ATPase subu...   142   4e-32
AF352828_1(AF352828|pid:none) Homo sapiens Na,K-ATPase alpha-4 s...   142   4e-32
AY734484_1(AY734484|pid:none) Hirudo medicinalis Na,K ATPase alp...   140   2e-31
(P28774) RecName: Full=Sodium/potassium-transporting ATPase subu...   140   2e-31

Homology SHK293 vs Genome