Dictyostelium discoideum cDNA Clone SHK270

Sequence SHK270

CTGTTGGCCT ACTGGATTTG TTTTTTTTTT AAAAAAAATT ATTTAATTAA
TTTATATAAA TAAAGGAAAG AAATGACAGA TACACAATCC AATGTTCCTC
AATCACAAAT TCAACCACAA GTACCAACAA TTGGTGTAGT TAGAGCAGTA
AATAGTGGTG ATTCATTGGT AATTCAAGAT TTAAAAACAG CCGATTCCCC
AAAAGTTGAA TATTCATTAT CTCATCTTAC TGTACCACGT TTAGGTTATC
ATGGTTCAAA TGATAAACCA CCAACAAAAG ATTTGCCATT TGCATGGGAA
AGTCGTGAAT TTTTAANATC AAAATGTATT GGTAAAAAAG TTCAATTCTT
TACAGATTAT ACTGCACCAA CTGGTAANAA ATTCATTTCA GTTTATCTTT
ATGATGATTT ANAAAATAGT TTAAATAAAC AAATGATTGA AGAGGGTTGG
GCTTCATTAT ATAGATCAAC AACTGGTAAA GAAAATAAAA AACCTGAATA
TTTAAATTTA ATTCAATTAG AAAGTGAAGC AATTTCAAAA GA--------
--GGCTTCAT TGGAAATTAA CAATGAAGAT TCAACCATTG TTGCAATGCC
AAAGGTTGGT GATATCGTTA AATTCAAATC TCAACATGAC AAGAAATGGC
ATCGTTCAAA GATTACCTCT ATCGCCGATG GTAAAATCAA TGTTAATCTC
ATTGATTTGG GTGAAAGAGA ATCTTTCCCA CAATCTCAAT CAAGTACTCT
CATTAGAAAT ATCAATCATA AATTACAAAG CCTTCCTTCA TTGGTAACTT
TGGTCAAATT AGCCTCTTGT AAGAATCCTT CCAATGATGA TATCTACAAT
GATGCTATGG ATTTCATGGA AAAAGAGTTT TTAGATCTCA AAGTTGGCGT
TAATATCATA CGTGATATCG ATGGTACTCA ACATGTTCTC CTCTCTGATA
ATGCTGGTAT TATCAATGGT GAATTGGTTC GTAATGGTTT GGTTAGTGTC
GATCGTTCAA CTAAATTACC CTCAATTCAA CAACTTCAAG ATGAAGAACA
AAAAGCTAAA TCAAAGAGAT TAGGTGTTTG GAGATTCGGT GATATCGATA
GTGATGATGA AGATGATAAA CCACGTTCAA ATTTCAAAGG TAAAGGTGGT
AAACCAATTT CAAAAAAATA ATTATAATAA TTTATAAATT TTCTTTTTAT
TTAAATAAAT AAATAAATAA ATAAAAAAGG NATAAAAATA AAAATAAAAA
GAATTAGC

Translated Amino Acid Sequence SHK270

llaywicfffkknylinlyk*RKEMTDTQSNVPQSQIQPQVPTIGVVRAVNSGDSLVIQD
LKTADSPKVEYSLSHLTVPRLGYHGSNDKPPTKDLPFAWESREFLXSKCIGKKVQFFTDY
TAPTGXKFISVYLYDDLXNSLNKQMIEEGWASLYRSTTGKENKKPEYLNLIQLESEAISK
---

---ASLEINNEDSTIVAMPKVGDIVKFKSQHDKKWHRSKITSIADGKINVNLIDLGERES
FPQSQSSTLIRNINHKLQSLPSLVTLVKLASCKNPSNDDIYNDAMDFMEKEFLDLKVGVN
IIRDIDGTQHVLLSDNAGIINGELVRNGLVSVDRSTKLPSIQQLQDEEQKAKSKRLGVWR
FGDIDSDDEDDKPRSNFKGKGGKPISKK*l**finflfi*ink*inkkgikikikris

Homology SHK270 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHK270 (SHK270Q) /CSM/SH/SHK2-C/SHK270Q.Seq.d/                       2149   0.0
VHQ162 (VHQ162Q) /CSM/VH/VHQ1-C/VHQ162Q.Seq.d/                       1207   0.0
VHP896 (VHP896Q) /CSM/VH/VHP8-D/VHP896Q.Seq.d/                       1207   0.0
VHN113 (VHN113Q) /CSM/VH/VHN1-A/VHN113Q.Seq.d/                       1207   0.0
VHL165 (VHL165Q) /CSM/VH/VHL1-C/VHL165Q.Seq.d/                       1207   0.0
VHB524 (VHB524Q) /CSM/VH/VHB5-A/VHB524Q.Seq.d/                       1207   0.0
SHL548 (SHL548Q) /CSM/SH/SHL5-B/SHL548Q.Seq.d/                       1207   0.0
SHC258 (SHC258Q) /CSM/SH/SHC2-C/SHC258Q.Seq.d/                       1207   0.0
CHM330 (CHM330Q) /CSM/CH/CHM3-B/CHM330Q.Seq.d/                       1207   0.0
CHI796 (CHI796Q) /CSM/CH/CHI7-D/CHI796Q.Seq.d/                       1207   0.0

Homology SHK270 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC176299|AC176299.1 Strongylocentrotus purpuratus clone R3-3...    50   0.022  2
AC179181|AC179181.1 Strongylocentrotus purpuratus clone R3-4...    50   0.13   1
CJ483315|CJ483315.1 Macaca fascicularis mRNA, clone: QtsA-10...    38   0.15   2
AC187074|AC187074.1 Zea mays chromosome UNK clone CH201-252I...    44   0.16   3
CJ483909|CJ483909.1 Macaca fascicularis mRNA, clone: QtsA-11...    38   0.32   3
DU069019|DU069019.1 139379 Tomato HindIII BAC Library Lycope...    30   0.36   4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    36   0.37   15
DT562240|DT562240.1 EST1072880 TMO Gossypium hirsutum cDNA, ...    48   0.51   1
AC187110|AC187110.1 Gallus gallus chromosome Z clone CH261-9...    48   0.51   1
AC006718|AC006718.1 Caenorhabditis elegans clone Y16E11, ***...    48   0.51   1

Homology SHK270 vs Protein

Sequences producing significant alignments:                      (bits) Value


BT071103_1(BT071103|pid:none) Picea sitchensis clone WS02771_D01...    87   3e-15
AM398207_1(AM398207|pid:none) Picea abies mRNA for TUDOR protein...    87   3e-15
AY320036_1(AY320036|pid:none) Oryza sativa (japonica cultivar-gr...    84   2e-14
AB010069_10(AB010069|pid:none) Arabidopsis thaliana genomic DNA,...    81   1e-13
CP000287_419(CP000287|pid:none) Cryptococcus gattii WM276 chromo...    81   1e-13
(Q7KZF4) RecName: Full=Staphylococcal nuclease domain-containing...    76   4e-12
AM270128_12(AM270128|pid:none) Aspergillus niger contig An07c010...    76   4e-12
HI519562_1(HI519562|pid:none) Sequence 37 from Patent EP2167683....    76   4e-12
AB209510_1(AB209510|pid:none) Homo sapiens mRNA for EBNA-2 co-ac...    76   4e-12
(Q5REU4) RecName: Full=Staphylococcal nuclease domain-containing...    76   5e-12

Homology SHK270 vs Genome