Dictyostelium discoideum cDNA Clone SHJ872

Sequence SHJ872

ACTGTTGGCC TACTGGTTCA ATATTTAATT CAACCAATAC TCCAATATCA
AATGATGTTA TTATTCAAAG ACAATGGGTA CCATTAGGTC CATCACTTTC
CGTTGGTCTC TTCAAGAATT GTTTTGGTGA TGCAAATTTC TTTATTGAAA
AGTCATCATT TAATTCAATT GGTGGTTTCA CTGAGGAAGT TGGTGTTGGT
TTAGAAGATC ATGAAATTTT GGCAAAACTT GTTATTCAAG GATTTAAACT
TTCCGTTTCA ACTGAACCAT TATTATACTA TAGATTCCAT GATTCAGTCA
ATCAAATGAT TTTTACAACC GATTCAAAAT CAAATCAAAT GCGTTATATT
CGTCCATTCT CTGAAATCCT AAGTAATGGT CATGTTCCAG TACTCAAGGT
TTTAGCAAAC AATGCAATTC ATGCTCAAAG TAAACGTGTT TTGGTAAACA
CTTGTAATAT CACGCTTTCA TCGATCCATC CAAATTATGG TCCAACTTCT
GGTGGTTCAT TGGTATCTAT TAGTGGTTCT GGTTTTAATT GTGGCATTAG
TAATGTATTG TTTGGTGGTG CTGCATGCTC AAATC----- -----GCCAA
GGCATCATCA AAGAATGTTG TTTCAGAAAC TGATGAACAA TTCCCAAGTT
ATAATGCCAG AAACTCCNCC AATCTGCAAA TAAAGTTGTA TTTTCAAAGA
AACCAACCAA TCCATACCTT GAACAACAAG AAGAAACAAA ACAATTTGAT
CAACCAACAG TAAATAAGAA GATGTCAGCA GCTGCAGTTG CCACTCAAAT
ATCTCAATTT AAAGCCAATG GTATTCGTCA AGTAATGGAC CAGGTTGTTA
AACAAAAAAA ACAACTCTTA AACTATGGTA TTTCAACAGT TGTCGATTTG
ATATCAACCT CTACAGATAC TTCAGCAGTT GTTCATCCAT CAACTCTTAA
AGAATCAATG AATATTATGA AAGTAGTTAG TCCAATGATG GTTAAATCAC
AAGTTTTACC AAGTGATTTC ATTTTATCTG TTAACTATTT AAGTAATGTC
AATCAACAAG TCATTGGTCA ACAATCAAAT ATCACTCAAG GTAAAACTGC
ACCAACCTAT GCTGATATGG TTTATAATGT TTCTTCAGAC ATTTTAGTGG
TATCCAATTC ATTGGCAGAT GGTATTCTTC AAAGAACTGC AATTGGTGAA
GAACCATTTA CAGTTGCAAG TGATAAAGGT TTCTCGATTA CAACATTTAA
AACTCTACAT ATGGAATTAA GTAAGAGTGG TCAATCGATT GGTTTCAAAA
AGGATGATGA AGGTCAATCT CTTGATGGTG AAAAACTTGC TTTCACTCCA
AAATTCAGTA TTCCATCAAG TGTTTTATCA AAGNAATAAA T

Translated Amino Acid Sequence SHJ872

CWPTGSIFNSTNTPISNDVIIQRQWVPLGPSLSVGLFKNCFGDANFFIEKSSFNSIGGFT
EEVGVGLEDHEILAKLVIQGFKLSVSTEPLLYYRFHDSVNQMIFTTDSKSNQMRYIRPFS
EILSNGHVPVLKVLANNAIHAQSKRVLVNTCNITLSSIHPNYGPTSGGSLVSISGSGFNC
GISNVLFGGAACSN---

---AKASSKNVVSETDEQFPSYNARNSXNLQIKLYFQRNQPIHTLNNKKKQNNLINQQ*i
rrcqqlqlplkylnlkpmvfvk*wtrllnkknns*tmvfqqlsi*yqplqilqqlfihql
lknq*il*k*lvq*wlnhkfyqvisfyllti*vmsinkslvnnqislkvklhqpmliwfi
mflqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrm
mkvnllmvknllslqnsvfhqvfyqxnk

Homology SHJ872 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHJ872 (SHJ872Q) /CSM/SH/SHJ8-C/SHJ872Q.Seq.d/                       2639   0.0
SLA580 (SLA580Q) /CSM/SL/SLA5-D/SLA580Q.Seq.d/                       1195   0.0
SHD252 (SHD252Q) /CSM/SH/SHD2-C/SHD252Q.Seq.d/                       1120   0.0
SHE351 (SHE351Q) /CSM/SH/SHE3-C/SHE351Q.Seq.d/                       1078   0.0
CHM830 (CHM830Q) /CSM/CH/CHM8-B/CHM830Q.Seq.d/                       1057   0.0
CHO145 (CHO145Q) /CSM/CH/CHO1-B/CHO145Q.Seq.d/                       1037   0.0
SHK255 (SHK255Q) /CSM/SH/SHK2-C/SHK255Q.Seq.d/                       1029   0.0
CHF451 (CHF451Q) /CSM/CH/CHF4-C/CHF451Q.Seq.d/                        999   0.0
CHH623 (CHH623Q) /CSM/CH/CHH6-A/CHH623Q.Seq.d/                        965   0.0
CHF543 (CHF543Q) /CSM/CH/CHF5-B/CHF543Q.Seq.d/                        952   0.0

Homology SHJ872 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


CJ483685|CJ483685.1 Macaca fascicularis mRNA, clone: QtsA-11...    46   2.2    1
CJ483622|CJ483622.1 Macaca fascicularis mRNA, clone: QtsA-11...    46   2.2    1
CJ454349|CJ454349.1 Macaca fascicularis mRNA, clone: QflA-20...    46   2.2    1
CJ447261|CJ447261.1 Macaca fascicularis mRNA, clone: QflA-12...    46   2.2    1
BD100231|BD100231.1 Novel genes cloned in humanneuroblastoma...    46   2.2    1
BD100230|BD100230.1 Novel genes cloned in humanneuroblastoma...    46   2.2    1
BD020293|BD020293.1 Novel gene and novel gene fragment clone...    46   2.2    1
BD020292|BD020292.1 Novel gene and novel gene fragment clone...    46   2.2    1
AR632719|AR632719.1 Sequence 1 from patent US 6846651.             46   2.2    1
AR274513|AR274513.1 Sequence 1 from patent US 6506581.             46   2.2    1

Homology SHJ872 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000970_2187(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    98   1e-18
CP002910_327(CP002910|pid:none) Klebsiella pneumoniae KCTC 2242,...    98   1e-18
AP006725_590(AP006725|pid:none) Klebsiella pneumoniae subsp. pne...    98   1e-18
CP002901_1372(CP002901|pid:none) Sulfobacillus acidophilus TPY, ...    44   0.017
CP000113_4498(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    40   0.25
CP002869_570(CP002869|pid:none) Paenibacillus mucilaginosus KNP4...    40   0.25
CP002830_6151(CP002830|pid:none) Myxococcus fulvus HW-1, complet...    40   0.42
CP000102_1487(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    40   0.42
CP000608_247(CP000608|pid:none) Francisella tularensis subsp. tu...    39   0.55
CP000437_1300(CP000437|pid:none) Francisella tularensis subsp. h...    39   0.55

Homology SHJ872 vs Genome