Homology SHD369 vs Protein
Query= SHD369 (SHD369Q) /CSM/SH/SHD3-C/SHD369Q.Seq.d/
(1396 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso... 85 9e-15
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom... 68 1e-09
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 68 1e-09
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS... 62 1e-07
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 60 3e-07
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS... 59 5e-07
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS... 59 7e-07
(Q54L75) RecName: Full=Tiger protein E1; AltName: Full=Loose agg... 58 1e-06
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ... 58 1e-06
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS... 57 2e-06
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS... 57 2e-06
(Q55GI8) RecName: Full=Tiger protein O1; AltName: Full=Transmemb... 57 3e-06
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS... 57 3e-06
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS... 57 3e-06
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS... 57 3e-06
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS... 57 3e-06
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS... 56 4e-06
FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS... 56 4e-06
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS... 55 7e-06
EU643473_4(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 55 1e-05
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS... 53 4e-05
CP002345_2101(CP002345|pid:none) Paludibacter propionicigenes WB... 53 4e-05
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso... 53 4e-05
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS... 53 5e-05
CP002047_7442(CP002047|pid:none) Streptomyces bingchenggensis BC... 48 0.001
CP002735_788(CP002735|pid:none) Delftia sp. Cs1-4, complete geno... 47 0.002
AC116982_63(AC116982|pid:none) Dictyostelium discoideum chromoso... 47 0.003
CP002480_2124(CP002480|pid:none) Granulicella sp. MP5ACTX9, comp... 47 0.003
CP000884_5785(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 46 0.005
CP002047_7443(CP002047|pid:none) Streptomyces bingchenggensis BC... 45 0.010
AC117076_37(AC117076|pid:none) Dictyostelium discoideum chromoso... 45 0.013
CP001323_444(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 44 0.022
AP012206_5165(AP012206|pid:none) Bradyrhizobium japonicum USDA 6... 43 0.038
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 43 0.038
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 43 0.050
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS... 42 0.065
CP000521_2693(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 42 0.065
AY219181_1(AY219181|pid:none) Homo sapiens fibrocystin L mRNA, c... 41 0.15
AK128617_1(AK128617|pid:none) Homo sapiens cDNA FLJ46776 fis, cl... 41 0.15
(Q86WI1) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k... 41 0.15
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS... 41 0.19
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS... 41 0.19
BX649562_2(BX649562|pid:none) Zebrafish DNA sequence from clone ... 41 0.19
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS... 41 0.19
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS... 41 0.19
AC116982_4(AC116982|pid:none) Dictyostelium discoideum chromosom... 41 0.19
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS... 41 0.19
BA000045_213(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 41 0.19
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS... 41 0.19
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS... 41 0.19
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS... 41 0.19
EU864430_1(EU864430|pid:none) Danio rerio polycystic kidney and ... 41 0.19
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS... 41 0.19
A31643(S22066;A31643;A26310;A23951;A33463;S01473) cell adhesion ... 40 0.32
CP001089_2882(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 40 0.32
AB055648_1(AB055648|pid:none) Mus musculus D86 mRNA, complete cds. 40 0.42
(Q80ZA4) RecName: Full=Fibrocystin-L; AltName: Full=Polycystic k... 40 0.42
(Q54T74) RecName: Full=S-cell enriched with leucine-rich repeat-... 40 0.42
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 40 0.42
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 39 0.55
CP000884_5870(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 0.55
AP012048_1307(AP012048|pid:none) Arcobacter sp. L DNA, complete ... 38 1.2
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 38 1.2
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 38 1.2
CP001769_315(CP001769|pid:none) Spirosoma linguale DSM 74, compl... 38 1.6
AP008955_4972(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 37 2.1
AC116984_31(AC116984|pid:none) Dictyostelium discoideum chromoso... 37 2.1
J04692_1(J04692|pid:none) Saccharomyces cerevisiae virus L-A maj... 37 2.1
M28353_2(M28353|pid:none) Saccharomyces cerevisiae virus L-A L1 ... 37 2.1
FJ374922_1(FJ374922|pid:none) Dictyostelium discoideum strain QS... 37 2.1
J04692_3(J04692|pid:none) Saccharomyces cerevisiae virus L-A maj... 37 2.1
CP000113_6246(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 37 2.1
CP002727_3238(CP002727|pid:none) Pseudomonas fulva 12-X, complet... 37 2.7
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 37 3.6
CP002994_5980(CP002994|pid:none) Streptomyces violaceusniger Tu ... 37 3.6
AG1542(AG1542) wall associated protein precursor (LPXTG motif) h... 36 4.7
AJ009961_1(AJ009961|pid:none) Fugu rubripes PRGFR1 gene, exons 1... 36 4.7
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 36 4.7
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 36 6.1
CP000721_1646(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 36 6.1
HM801842_1(HM801842|pid:none) Homo sapiens MUC19 variant 12 (MUC... 36 6.1
(Q7Z5P9) RecName: Full=Mucin-19; Short=MUC-19; Flags: P... 36 6.1
CP002480_163(CP002480|pid:none) Granulicella sp. MP5ACTX9, compl... 35 8.0
AE014297_4555(AE014297|pid:none) Drosophila melanogaster chromos... 35 8.0
(P52654) RecName: Full=Transcription initiation factor IIA subun... 35 8.0
AE014297_4554(AE014297|pid:none) Drosophila melanogaster chromos... 35 8.0
>AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromosome 2
map 3323568-3470138 strain AX4, complete sequence.
Length = 945
Score = 85.1 bits (209), Expect = 9e-15
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Frame = +1
Query: 658 QTLTNLMSRLQPVVKSI-TQSQTSGSTVTIKGSFFN----------------KKDTGLKI 786
Q L + P + SI ++ +G VTI G + N L I
Sbjct: 661 QKSNQLQLPIIPFITSIPSKLSVNGGVVTIIGKYLNLLNYNFVNENEIINNNNNGNHLNI 720
Query: 787 MVGNHSCDSLTIVDTQ---TLTCSAPPGSGIKNAVSFMVKDAGSKLSPP-LFLDYSPPTI 954
+G+ C + +D + ++TC PPGSG +VS ++ D + +P L Y PTI
Sbjct: 721 KIGSQICKDIQQLDLKHFTSITCKMPPGSGGDYSVSILINDILVQGNPKGLTFSYMSPTI 780
Query: 955 MSSTSVKQVEGGQVTIYGTNFENTLITVNVGSKSCEDVSVIDSTKLTC---SISKSTIDP 1125
++STSV GG +TI+G+ + + C V++ DS LTC +S+S
Sbjct: 781 INSTSVSPTTGGLITIFGSQLAKPINITIANLQQCIYVNITDSNSLTCYLPPLSESLNKS 840
Query: 1126 SLTNKKLAVNVTVNGQSANGEVFEY 1200
S+ + + VNGQS + +VF+Y
Sbjct: 841 SIERSDHQIQINVNGQSGDADVFKY 865
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,164,716,847
Number of extensions: 61311783
Number of successful extensions: 154578
Number of sequences better than 10.0: 86
Number of HSP's gapped: 154409
Number of HSP's successfully gapped: 103
Length of query: 465
Length of database: 1,732,582,204
Length adjustment: 136
Effective length of query: 329
Effective length of database: 1,005,089,236
Effective search space: 330674358644
Effective search space used: 330674358644
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home