<List of Series> <Series: SHD2-D> <Clone: SHD289> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Clone SHD289
Dictyostelium discoideum cDNA Project Home
Sequence SHD289
ATATATTTTT CATTTTATTA AAATTAATAA TATATAATAT ATAATATATA
TATTACTTTT ACTAATATAT ATTTTTTTAA TTTAAAAAAA TGTTAATAAA
TAAAATTTTA TTTTTATTTT TTATTCTATC ACTAACAATA TTTAATATTG
TTGATGCTGG TTATACTTTA TCTGTTAAAG GAAAAAAGTT AATATATACT
GGTGCCAATG TAGATTTCAA AATTACTGAA ATTTTGTTAA CTTCCCAAAA
AATATTACCA GATTACTCAA TTACATTCAC TTGTGAAATT CCATCTGCCA
ATAGCCCTGT TTGTACGAGT ATGGATATGG ACTTTACAAA ATTAGCTGGA
AAATTAACTC TAAGGGGAGC AAATTTAAAA ACCCCAAATA TAGTAATTGC
CTATGATATT AAAGCCAATC AAATTCCACT ACCATTACCA ACTGAGGTTA
AATGGGAACC ACCAACAATG GCTGGTACAG CTGCTCTTAT GACTGGAGAT
TTCTTATTAT TTGGTGAAGA TGTTACAACT CTTCCTGGTG TTTACAATTC
AAAA------ ----ACTGTT TCATTCGATT TGCCAAGTAC ATTATTGAGT
GATTCATATG CCACCATTTC AGTTGATGGT ATTAAAAACT CAGACTCTGA
CCAACTTGAT GTCGAGCTTC AACCAGTTGT CAAATCAATT ACTCAATCAC
AAACCTCTGG ATCAACTGTG ACAATTAAAG GTTCATTCTT TAATAAAAAG
GACACTGGTT TGAAAATTAT GGTTGGAAAT CATTCATGTG ATTCTTTGAC
TATTGTAGAT ACCCAAACAC TTACTTGCTC TGCTCCACCA GGAAGTGGTA
TTAAAAATGC TGTTTCATTC ATGGTTAAAG ATGCTGAATC AAAATTATCA
CCACCATTGT TTTTAGATTA TAGTCCACCA ACCATTATGT CATCAACAAG
TGTAAAACAA GTTGAAGGTG GTCAAGTTAC TATTTATGGT ACCAATTTTG
AAAATACTTT GATTACAGTA AATGTTGGAA GTAAATCATG TGAAGATGTT
TCTGTAATAG ATTCAACCAA ACTTACTTGT TCAATTTCAA AATCAACAAT
AGATCCTTCA TTAACAAATA AGAAATTGGC CGTAAATGTT ACTGTAAATG
GTCAATCTGC TAATGGTGAA GTATTTGAAT ATGATAATGA AGCACTCAAT
ACTGAAACTC CTAAACCAAC ATTAGCACCA ACTATAAAAC CAACTGAAAA
ACCAACTGAA AAACCAACTG AAAAACCAAC AACATCTCCA ATAGATAAAC
ACATTGAAAA TAGTTCTTCT AAAATTTCTA ATTCATTAAT TTTAATTTTC
TCATTATTAT TACAATCCAA ATATTTAAAA A
Translated Amino Acid Sequence SHD289
<All Frames>
iffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSK---
---TVSFDLPSTLLSDSYATISVDGIKNSDSDQLDVELQPVVKSITQSQTSGSTVTIKGS
FFNKKDTGLKIMVGNHSCDSLTIVDTQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFL
DYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLITVNVGSKSCEDVSVIDSTKLTCSISKS
TIDPSLTNKKLAVNVTVNGQSANGEVFEYDNEALNTETPKPTLAPTIKPTEKPTEKPTEK
PTTSPIDKHIENSSSKISNSLILIFSLLLQSKYLK
Homology SHD289 vs CSM-cDNA
<more CSM info>
Sequences producing significant alignments: (bits) Value
SHD289 (SHD289Q) /CSM/SH/SHD2-D/SHD289Q.Seq.d/ 2097 0.0
SHA208 (SHA208Q) /CSM/SH/SHA2-A/SHA208Q.Seq.d/ 1281 0.0
AHE386 (AHE386Q) /CSM/AH/AHE3-D/AHE386Q.Seq.d/ 1281 0.0
AFO763 (AFO763Q) /CSM/AF/AFO7-C/AFO763Q.Seq.d/ 1281 0.0
AHJ148 (AHJ148Q) /CSM/AH/AHJ1-B/AHJ148Q.Seq.d/ 1277 0.0
AHO721 (AHO721Q) /CSM/AH/AHO7-A/AHO721Q.Seq.d/ 1275 0.0
AHL261 (AHL261Q) /CSM/AH/AHL2-C/AHL261Q.Seq.d/ 1275 0.0
AHJ166 (AHJ166Q) /CSM/AH/AHJ1-C/AHJ166Q.Seq.d/ 1275 0.0
AHH659 (AHH659Q) /CSM/AH/AHH6-C/AHH659Q.Seq.d/ 1275 0.0
AHD313 (AHD313Q) /CSM/AH/AHD3-A/AHD313Q.Seq.d/ 1275 0.0
Homology SHD289 vs DNA
<more DNA info>
Sequences producing significant alignments: (bits) Value N
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma... 38 0.015 18
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ... 34 0.027 20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma... 38 0.054 13
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clon... 40 0.078 10
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clon... 36 0.24 9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma... 32 0.39 16
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12,... 40 0.41 11
AZ823843|AZ823843.1 2M0098C08F Mouse 10kb plasmid UUGC1M lib... 46 0.53 2
AV229624|AV229624.1 Mus musculus 0 day neonate skin cDNA, RI... 44 0.66 2
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 ... 36 0.73 10
Homology SHD289 vs Protein
<more Protein info>
Sequences producing significant alignments: (bits) Value
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso... 94 2e-17
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 71 2e-10
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom... 69 5e-10
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ... 62 6e-08
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS... 62 8e-08
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 60 2e-07
(Q55GI8) RecName: Full=Tiger protein O1; AltName: Full=Transmemb... 60 4e-07
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS... 60 4e-07
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS... 59 5e-07
(Q54L75) RecName: Full=Tiger protein E1; AltName: Full=Loose agg... 59 9e-07
Homology SHD289 vs Genome
<more Genome info>
<List of Series> <Series: SHD2-D> <Clone: SHD289> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Project Home