Homology SHC204 vs Protein
Query= SHC204 (SHC204Q) /CSM/SH/SHC2-A/SHC204Q.Seq.d/
(1304 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 144 1e-32
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso... 142 4e-32
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom... 139 5e-31
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso... 138 8e-31
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom... 136 2e-30
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos... 136 3e-30
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso... 119 5e-25
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso... 118 9e-25
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso... 115 7e-24
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom... 111 8e-23
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso... 103 2e-20
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso... 101 8e-20
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso... 66 5e-09
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 65 1e-08
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 64 1e-08
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 64 2e-08
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 63 3e-08
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 63 4e-08
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 62 9e-08
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 61 2e-07
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 60 3e-07
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 60 3e-07
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 56 4e-06
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 54 2e-05
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso... 53 3e-05
(Q54KP9) RecName: Full=Putative uncharacterized protein DDB_G028... 53 4e-05
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 51 2e-04
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 50 3e-04
CP002304_250(CP002304|pid:none) Halanaerobium hydrogeniformans, ... 36 5.6
CP001998_1908(CP001998|pid:none) Coraliomargarita akajimensis DS... 35 9.5
>AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosome 2
map 6163571-6199719 strain AX4, complete sequence.
Length = 909
Score = 144 bits (362), Expect = 1e-32
Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 1/185 (0%)
Frame = +2
Query: 566 NGSMTPISVEIEYFENERKIEFAGQEIIMKPSSIKYTIYIDQYPFSTKLSQLQLXXXXXX 745
N S T ISV +E+FE+ I FA + +IM PSSIKYTI I +Y FS+KL+QLQL
Sbjct: 683 NESETNISVTLEWFESLTNITFANENLIMNPSSIKYTIEISKYKFSSKLNQLQLVMMAEL 742
Query: 746 XXXXXXXXCSNKEFDNTTS-ESSDYVKLSISGKSLYGRFIRRALVDSTPITISNELLDKS 922
CSN EF T+S ++S+Y+K+ + SLYGRFI+RA++DS P I N LD++
Sbjct: 743 SSNKTKDLCSNNEFGETSSGDNSNYIKIQVDNHSLYGRFIKRAIIDSVPRAIGNVQLDET 802
Query: 923 LGAISDSHTSQSFIGINIPIYNKNVKIDPDFSLILXXXXXXXXXXXXICSAKSTKSKSGL 1102
+ + ++ +SQS+IGI +P + K++ IDPDFS+++ + SGL
Sbjct: 803 MRPLKNASSSQSYIGIVVPYFEKSIIIDPDFSVLIDSSKLESNSNSNSICLIQDQLISGL 862
Query: 1103 TTAQL 1117
T +Q+
Sbjct: 863 TKSQI 867
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,227,611,832
Number of extensions: 34166072
Number of successful extensions: 78140
Number of sequences better than 10.0: 30
Number of HSP's gapped: 78077
Number of HSP's successfully gapped: 32
Length of query: 434
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 299
Effective length of database: 1,010,438,449
Effective search space: 302121096251
Effective search space used: 302121096251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home