Dictyostelium discoideum cDNA Clone SHC204

Sequence SHC204

AATTTAAGAG ATTCTTTTTT CTTACCAAAG ATAGTATCAA GTTATGATGA
TGGATCTCTT AACTACTTTA TTAATGCAAG ACTTATTATT TCTATTGGTG
AAGTATTATG TACATTATCA CTTCAAAATT ATTCAGATGT ATATCAAGAT
AAAAATAGTT ATAAATATCA AGATTTTAAA TTTGAACCAA CAGATTTACA
AAGTTCAAAA AATATAGTTA ATTTAGATGA TTTATTAACA TTCTTAAATT
ATAAAGGAGA GAATTTAACA AGTAGAAATG AAATTGAATA TAATTGGGAA
GGTGGTAAAA CAAATTATGA ATCATTTCCT TTTGGTTTTG GTTCTGGAAA
TAATAAAAAT TTTAATTTAG ATATTTCAAT TTTTACAATG TTGGATGTAT
CAAATAGTTC ATACTCATTT TCAGTTGGAA GTTATTCATA TTCATTCTCT
GGTCCTAATT TTAAAAATCT TTCAGCACCA TTAATTACCA AATTTAATAT
TTTAGATACT TTTTCAGAAG ATGATAACAA ACTTTTATTT AGATT-----
-----TATAA ATAAAAATGG ATCAATGACA CCAATTTCAG TAGAGATTGA
ATACTTTGAA AATGAAAGAA AAATTGAATT TGCAGGTCAA GAAATTATAA
TGAAACCATC ATCAATTAAA TATACAATTT ATATTGATCA ATATCCATTT
TCAACAAAAT TGAGTCAATT ACAATTAATT ATATCAGCCA CTGCAATAAT
TAATTCAAAT TCAGATTCAT GTTCAAATAA AGAATTTGAT AATACAACAA
GTGAAAGTTC AGATTATGTT AAATTATCAA TATCAGGTAA AAGTTTATAT
GGTAGATTCA TAAGGAGAGC GTTGGTTGAT TCAACTCCAA TTACAATTTC
AAATGAATTA TTAGATAAAT CATTAGGTGC AATTAGTGAT TCTCACACAT
CCCAATCATT TATTGGTATT AATATACCAA TCTATAATAA AAATGTTAAA
ATTGATCCAG ATTTCTCATT AATTCTCAAT TCAAATCCAT CAACAACAAC
AAATGAAAAT TCAATTTGTT CTGCAAAATC AACAAAATCC AAATCTGGTT
TAACAACAGC CCAGTTAGCA GGGATAATTG TTGGTTCCGT TGGTGCTATT
GCAATTGTTT TTGCCACTGT TGTCACAATA AAAAGAAAAA AAGCTCTAAA
AAAAGAAATG AAGGTGTTTG GGAAAAAAAT GCAAGCAATA AATAATTAAT
AAATTGTCTT TAAAAATCAA ATCGACATTT TAAAATTTTT CCTCATNCTA
TTAA

Translated Amino Acid Sequence SHC204

NLRDSFFLPKIVSSYDDGSLNYFINARLIISIGEVLCTLSLQNYSDVYQDKNSYKYQDFK
FEPTDLQSSKNIVNLDDLLTFLNYKGENLTSRNEIEYNWEGGKTNYESFPFGFGSGNNKN
FNLDISIFTMLDVSNSSYSFSVGSYSYSFSGPNFKNLSAPLITKFNILDTFSEDDNKLLF
R---

---INKNGSMTPISVEIEYFENERKIEFAGQEIIMKPSSIKYTIYIDQYPFSTKLSQLQL
IISATAIINSNSDSCSNKEFDNTTSESSDYVKLSISGKSLYGRFIRRALVDSTPITISNE
LLDKSLGAISDSHTSQSFIGINIPIYNKNVKIDPDFSLILNSNPSTTTNENSICSAKSTK
SKSGLTTAQLAGIIVGSVGAIAIVFATVVTIKRKKALKKEMKVFGKKMQAINN**ivfkn
qidilkfflxll

Homology SHC204 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SHC204 (SHC204Q) /CSM/SH/SHC2-A/SHC204Q.Seq.d/                       2278   0.0
CHG664 (CHG664Q) /CSM/CH/CHG6-C/CHG664Q.Seq.d/                       1237   0.0
CHL276 (CHL276Q) /CSM/CH/CHL2-D/CHL276Q.Seq.d/                        987   0.0
CHN237 (CHN237Q) /CSM/CH/CHN2-B/CHN237Q.Seq.d/                         58   4e-07
FC-BS23 (FC-BS23Q) /CSM/FC/FC-BS/FC-BS23Q.Seq.d/                       52   2e-05
FC-BT04 (FC-BT04Q) /CSM/FC/FC-BT/FC-BT04Q.Seq.d/                       50   9e-05
VFE449 (VFE449Q) /CSM/VF/VFE4-C/VFE449Q.Seq.d/                         42   0.021
SSM168 (SSM168Q) /CSM/SS/SSM1-C/SSM168Q.Seq.d/                         42   0.021
SSL394 (SSL394Q) /CSM/SS/SSL3-D/SSL394Q.Seq.d/                         42   0.021
SSD765 (SSD765Q) /CSM/SS/SSD7-C/SSD765Q.Seq.d/                         42   0.021

Homology SHC204 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 ma...    58   7e-09  6
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 ma...    44   5e-08  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   1e-07  19
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC g...    40   6e-07  21
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...    38   3e-06  17
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 ma...    34   1e-05  16
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 ma...    38   2e-05  17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 ma...    36   4e-05  13
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC g...    38   4e-05  15
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 ma...    38   5e-05  10

Homology SHC204 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   144   1e-32
AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...   142   4e-32
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...   139   5e-31
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...   138   8e-31
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...   136   2e-30
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...   136   3e-30
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...   119   5e-25
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...   118   8e-25
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...   115   7e-24
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...   111   8e-23

Homology SHC204 vs Genome