Dictyostelium discoideum cDNA Clone SFF706

Sequence SFF706

ATATTCTCTC TTTATTTCTT TTCTATATAT AGATAAATTT TTTTTAGAAA
AACTAAAAAA AAAACCTCAA ACAATTAATA CAAAATGGTA AACATTGGTG
GAACTCAAGA AAAATGTACT GCATGTGCTA AAACTGTATA CTTAACAGAA
AAGATTGTAG TTGAAGATAA AGAAGATAAG AAAACTTTCC ACAAATTATG
TTTAAAATGT ACTCACTGTA AGCTTACATT AAGTCTTGGT AACTATGCAT
CATTAAATGG NGTATTCTAT TGTAAACCAC ATTTCAAACA ATTATTCGCC
ACCAAAGGTA ACTACGATGA AGGTTTCGGT AAATCAAAAC ATTCTGAAAA
ATGGACACCA CAAGCCACCC CAACTGGTAC TTCTTCATTC ATTCCAGTTG
AAGAATCAAA ATCATCAGAA AAGAAAGAAA CACCAACAAC AATTTCATCA
AAATTCTCAG GATCAACTGA AAAATGTAAT TTCTGTAATA AGACAGTATA
TTTAACAGAA AAGATTGTTG TTGAAGATAA AGAAGATAAG AAAGTNTTAC
ATAAACAATG TTTGAAATGT ACACATTGTA GTGTTGTATT AAATCTTGGT
ACCTATGCAT CAATGAAAGG TGTATTCTAT TGTAAACCAC ATTTCAAACA
ATTATTCGCC ACCAAAGGTA ACTATGATGA AAGTTTTGGT AACACCAAAG
CCNCCGATAA ATGGGCACCA CAAACCA--- -------CCN CCCTTTAAAN
AACTNTATGC CNCTCAAGGT AATTTANATG GTGGNTTCGG TAAACCAAAA
CNCTNTGAAA AATGGGAAAA TAACCCNTTN CCATATTTAN AAAAGGATAG
CAGTTATGNA CCATCCGTTG AAAAGGTTGA ATNTCAAATG AATAATGCTT
CATCTGAATC TGATGNTGAT AGATTTNAAA ATATTAACAA TGATGATTNT
GATNAACCAA GAAGNCAACA ACAACCAGTT TNTCAACCAG AANAAGAACN
ACAACAACAA NAANAAGAAA AAGTTGAAGA ACCNATCTCT GAANAANAAN
AAAAAGTTGA ANAAAAAGTT GAAGAACCNG TCGCTGAACA ANAANAANAA
AAGGTTGAGG AACCNGNTGN TGCTGAANAA NAAAAAGTTG AAGAACCNGN
TACTGAANAA GAAAAAGTTG AAGAACCNGN CGNTGCCNCT GAAGAACCNG
TTTAAGAAGA AACNAAAGCT GAAGAAGAAA ACTAAACNT

Translated Amino Acid Sequence SFF706

ifslyffsiyr*iffrktkkktsnn*YKMVNIGGTQEKCTACAKTVYLTEKIVVEDKEDK
KTFHKLCLKCTHCKLTLSLGNYASLNGVFYCKPHFKQLFATKGNYDEGFGKSKHSEKWTP
QATPTGTSSFIPVEESKSSEKKETPTTISSKFSGSTEKCNFCNKTVYLTEKIVVEDKEDK
KVLHKQCLKCTHCSVVLNLGTYASMKGVFYCKPHFKQLFATKGNYDESFGNTKAXDKWAP
QT---

---PPFKXLYAXQGNLXGGFGKPKXXEKWENNPXPYLXKDSSYXPSVEKVEXQMNNASSE
SDXDRFXNINNDDXDXPRXQQQPVXQPEXEXQQQXXEKVEEPISEXXXKVEXKVEEPVAE
QXXXKVEEPXXAEXXKVEEPXTEXEKVEEPXXAXEEPV*eetkaeeen*t

Homology SFF706 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SFF706 (SFF706Q) /CSM/SF/SFF7-A/SFF706Q.Seq.d/                       2000   0.0
AFN295 (AFN295Q) /CSM/AF/AFN2-D/AFN295Q.Seq.d/                       1336   0.0
SFE749 (SFE749Q) /CSM/SF/SFE7-C/SFE749Q.Seq.d/                       1334   0.0
CHO514 (CHO514Q) /CSM/CH/CHO5-A/CHO514Q.Seq.d/                       1330   0.0
AFE756 (AFE756Q) /CSM/AF/AFE7-C/AFE756Q.Seq.d/                       1330   0.0
CHA595 (CHA595Q) /CSM/CH/CHA5-D/CHA595Q.Seq.d/                       1326   0.0
SFD622 (SFD622Q) /CSM/SF/SFD6-A/SFD622Q.Seq.d/                       1324   0.0
AFL234 (AFL234Q) /CSM/AF/AFL2-B/AFL234Q.Seq.d/                       1324   0.0
AFG415 (AFG415Q) /CSM/AF/AFG4-A/AFG415Q.Seq.d/                       1324   0.0
AFK438 (AFK438Q) /CSM/AF/AFK4-B/AFK438Q.Seq.d/                       1322   0.0

Homology SFF706 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 ma...    34   0.003  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 ma...    38   0.007  12
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12,...    36   0.010  11
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 ...    34   0.010  11
BI747172|BI747172.1 rm36g08.y1 Meloidogyne arenaria egg pAMP...    42   0.017  2
BE858201|BE858201.1 7g19d02.x1 NCI_CGAP_Brn23 Homo sapiens c...    52   0.019  1
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromo...    34   0.020  14
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clon...    36   0.025  11
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12,...    36   0.039  11
BI504534|BI504534.1 BB170004B20D05.5 Bee Brain Normalized/Su...    38   0.057  2

Homology SFF706 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote...   116   3e-24
GQ901953_1(GQ901953|pid:none) Hevea brasiliensis LIM1 mRNA, comp...   114   9e-24
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr...   114   1e-23
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM...   114   2e-23
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L...   114   2e-23
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882....   114   2e-23
AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2...   112   3e-23
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M...   112   3e-23
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN...   110   1e-22
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote...   109   3e-22

Homology SFF706 vs Genome