Dictyostelium discoideum cDNA Clone SFF147

Sequence SFF147

AAAAACTTTT AAAAATAAAT GATGGAAACA AATAATGAAA ATAAAGAAAA
ATTAAAATTA TATACTTGGG ATGAAGTATC AAAACATAAT CAAAAAAATG
ATTTATGGAT TATAGTTGAT GGTAAAGTTT ATAATATTAC AAAATGGGTA
CCATTACATC CAGGTGGTGA AGATATATTA TTATTATCAG CAGGTAGAGA
TGCAACAAAT TTATTTGAAA GTTATCATCC AATGACGGAT AAACACTATT
CCTTAATTAA ACAATATGAA ATTGGATATA TATCATCATA TGAACATCCA
AAATATGTTG AAAAAAGTGA ATTCTATTCT ACATTGAAAC AACGTGTTAG
AAAACATTTC CAAACTTCAT CACAAGATCC AAAAGTTTCA GTTGGAGTTT
TCACAAGAAT GGNGTTAATT TATTTATTCC TATTTGTTAC TTACTATTTA
TCACAATTCT CTACGGATAG ATTTTGGTTA AATTGTATAT TCGCTGTTTT
ATATGGTGTT GCAAATTCGT TATTTGGATT ACACACGATG CATGACGCTT
GCCACACAGC AATC------ ----TACGCT TTAAAATATC GTATTCAAGA
TCACGAAATC TTTACAAAGA AATCAAATGG TGCAATTAGA TATTCACCAA
TATCAACGAT TGATACTGCA ATTTTCATAC TTGGTAAATT GGTTTTCATT
ATCTCTCGTT TCATACTCCC ATTAATCTAT AATCATTCAT TCTCTCATTT
AATTTGTTTC TTCCTAATCT CTGAATTGGT TTTAGGTTGG TATTTAGCCA
TTTCTTTTCA AGTTAGTCAT GTAGTTGAAG ATCTTCAATT CATGGCAACA
CCTGAAATTT TCGATGGTGC TGATCACCCA TTACCAACAA CCTTCAATCA
AGATTGGGCA ATTCTTCAAG TTAAAACTAC TCAAGATTAT GCTCAAGATT
CAGTTTTAAG TACTTTCTTT TCTGGTGGTT TAAATTTACA AGTTATTCAT
CATTGTTTCC CAACAATTGC TCAAGATTAT TACCCACAAA TTGTTCCAAT
TCTTAAAGAA GTTTGTAAAG AATATAATGT TACATATCAT TATAAGCCAA
CATTTACTGA AGCAATAAAG TCTCATATCA ACTATCTTTA CAAAATGGGT
AATGATCCAG ACTATGTCAG AAAACCAGTA AACAAAAACG ATTAATCAAA
CTGTATTATC TCTTCTTAAT TTCAAATTAT TAGTTTATAT CTCTTATTTA
TTTTTTAAAA AAAATGTTAG AAAAATNAAT CCAAGAAA

Translated Amino Acid Sequence SFF147

knf*k*MMETNNENKEKLKLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDIL
LLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHF
QTSSQDPKVSVGVFTRMXLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTM
HDACHTAI---

---YALKYRIQDHEIFTKKSNGAIRYSPISTIDTAIFILGKLVFIISRFILPLIYNHSFS
HLICFFLISELVLGWYLAISFQVSHVVEDLQFMATPEIFDGADHPLPTTFNQDWAILQVK
TTQDYAQDSVLSTFFSGGLNLQVIHHCFPTIAQDYYPQIVPILKEVCKEYNVTYHYKPTF
TEAIKSHINYLYKMGNDPDYVRKPVNKND*snciiss*fqiislyllfif*kkc*knxsk
k

Homology SFF147 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SFF147 (SFF147Q) /CSM/SF/SFF1-B/SFF147Q.Seq.d/                       2280   0.0
SSG614 (SSG614Q) /CSM/SS/SSG6-A/SSG614Q.Seq.d/                       1330   0.0
CFB188 (CFB188Q) /CSM/CF/CFB1-D/CFB188Q.Seq.d/                       1296   0.0
SFJ773 (SFJ773Q) /CSM/SF/SFJ7-D/SFJ773Q.Seq.d/                       1285   0.0
SFG336 (SFG336Q) /CSM/SF/SFG3-B/SFG336Q.Seq.d/                       1130   0.0
VSD576 (VSD576Q) /CSM/VS/VSD5-D/VSD576Q.Seq.d/                        993   0.0
SSD596 (SSD596Q) /CSM/SS/SSD5-D/SSD596Q.Seq.d/                        670   0.0
AFA237 (AFA237Q) /CSM/AF/AFA2-B/AFA237Q.Seq.d/                        577   e-163
VSF803 (VSF803Q) /CSM/VS/VSF8-A/VSF803Q.Seq.d/                        149   1e-34
VFO589 (VFO589Q) /CSM/VF/VFO5-D/VFO589Q.Seq.d/                        149   1e-34

Homology SFF147 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AB022097|AB022097.1 Dictyostelium discoideum FadB mRNA for d...  1330   0.0    2
AB029311|AB029311.1 Dictyostelium discoideum FadA gene for f...   113   3e-96  11
BD092935|BD092935.1 Methods and compositions for synthesis o...    90   9e-47  6
BD082645|BD082645.1 Methods and compositions for synthesis o...    90   9e-47  6
BD082630|BD082630.1 Methods and compositions for synthesis o...    90   9e-47  6
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           32   5e-07  23
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitoch...    38   7e-05  10
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 ma...    34   1e-04  20
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 ma...    30   2e-04  17
AL954832|AL954832.12 Zebrafish DNA sequence from clone DKEY-...    36   7e-04  14

Homology SFF147 vs Protein

Sequences producing significant alignments:                      (bits) Value


(O96099) RecName: Full=Delta(5) fatty acid desaturase B;        ...   427   e-118
(Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A;        ...   276   2e-72
(Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C...   229   2e-58
FR824411_8(FR824411|pid:none) Albugo laibachii Nc14, genomic con...   152   3e-35
FR824411_11(FR824411|pid:none) Albugo laibachii Nc14, genomic co...   152   3e-35
FR824411_14(FR824411|pid:none) Albugo laibachii Nc14, genomic co...   152   3e-35
AB188307_1(AB188307|pid:none) Mortierella alpina gene for delta5...   149   3e-34
(O74212) RecName: Full=Delta(5) fatty acid desaturase;          ...   148   8e-34
EF678404_1(EF678404|pid:none) Picea sitchensis clone WS0291_A04 ...   140   1e-31
FR824411_10(FR824411|pid:none) Albugo laibachii Nc14, genomic co...   138   6e-31

Homology SFF147 vs Genome