Dictyostelium discoideum cDNA Clone FC-BS12

Size:		2.0K
3' sequence:	CY980508
5' sequence:	KS980515
Whole insert?:	*
Accession #:	*
Remarks:	3'-A stretch

Sequence FC-BS12

GAGAGATAAA AATGTTAAGA GGTATTGAAA TTAGAGGAAA AGTTGATAAA
AATGTTAAAT CAATATTAAC AGAAGAGTGT TTAACATTTT TAGGAGAATT
AGAAAGAAGA TTTGGAGGTA TTAGAAAGAA CTTATTACAA AAGAGATTAG
ATAGACAAAT TGATATTAAT AATGGTATTT TACCAAGTTT GTTAAAGGAT
AGCGATTGTA AGAGAGCCAC AGATAAGAAT TGGAAATGTT CTTCAGTACC
ATTAGAAATT CAAGATCGTC GTGTTGAAAT TACCGGACCT ACCGATAGAA
AGATGGTAAT CAATGCATTG AATTCAGGTG CTAAAGTATT TATGGCAGAT
TTCGAGGATG CAAATTGCCC AAATTGGGAA AACTCGATCC ACGGTCAACA
AAATATGATT GATGCAAACA ATAGAACCAT TTCATTCACT TCAGCAGAGG
GTAGAAAATA TGAATTAAAT AAACAGGTGG CAGTACTTTT CGTCAGACCA
AGAGGTTGGC ATTTAAATGA AGATCATTTA GCTATTGATG GTCTTTCAAT
GTCTG----- -----TTTTT CTCCAAAATT ATAAAAAAAA AAAAAAAAAA
ATAAATAATA AAATAAAATT AATTAATAAA TAAGAATAAT CATGAGTTTC
CCCAAAAATA ACCAAAAAAA CCTTTGATAA AAATAAAATT ATTATTAAAA
TATTTTATTT TTTATTTTCA TCTTTTATTG CTGGAGTATA CCATGTTTCA
TTTTCCAAAT CAGATAATCC TGGCAAACTT TTGATAAAAT AAATATTAAA
ATAAAAATAA AATAAATATT CTTTGATTAT TAAAAA

Translated Amino Acid Sequence FC-BS12

EIKMLRGIEIRGKVDKNVKSILTEECLTFLGELERRFGGIRKNLLQKRLDRQIDINNGIL
PSLLKDSDCKRATDKNWKCSSVPLEIQDRRVEITGPTDRKMVINALNSGAKVFMADFEDA
NCPNWENSIHGQQNMIDANNRTISFTSAEGRKYELNKQVAVLFVRPRGWHLNEDHLAIDG
LSMS---

---FLQNYKKKKKKINNKIKLINK*e*s*vspkitkktfdknkiiikifyflfssfiagv
yhvsfsksdnpgkllik*ilk*k*nkysliik

Homology FC-BS12 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-BS12 (FC-BS12Q) /CSM/FC/FC-BS/FC-BS12Q.Seq.d/                     1100   0.0
VSD839 (VSD839Q) /CSM/VS/VSD8-B/VSD839Q.Seq.d/                       1084   0.0
VFL317 (VFL317Q) /CSM/VF/VFL3-A/VFL317Q.Seq.d/                       1084   0.0
VFI785 (VFI785Q) /CSM/VF/VFI7-D/VFI785Q.Seq.d/                       1084   0.0
VFA277 (VFA277Q) /CSM/VF/VFA2-D/VFA277Q.Seq.d/                       1084   0.0
SFF709 (SFF709Q) /CSM/SF/SFF7-A/SFF709Q.Seq.d/                       1084   0.0
VFJ631 (VFJ631Q) /CSM/VF/VFJ6-B/VFJ631Q.Seq.d/                       1070   0.0
VFJ638 (VFJ638Q) /CSM/VF/VFJ6-B/VFJ638Q.Seq.d/                        969   0.0
AFK696 (AFK696Q) /CSM/AF/AFK6-D/AFK696Q.Seq.d/                        969   0.0
VFB391 (VFB391Q) /CSM/VF/VFB3-D/VFB391Q.Seq.d/                        965   0.0

Homology FC-BS12 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU284988) Dictyostelium discoideum gamete cDNA clone:FC-BS1...  1100   0.0    1
(AU264635) Dictyostelium discoideum vegetative cDNA clone:VS...  1084   0.0    1
(BJ415572) Dictyostelium discoideum cDNA clone:ddv23b05, 5' ...  1084   0.0    1
(BJ414349) Dictyostelium discoideum cDNA clone:ddv18j21, 5' ...  1084   0.0    1
(BJ410789) Dictyostelium discoideum cDNA clone:ddv1i20, 5' e...  1084   0.0    1
(BJ387032) Dictyostelium discoideum cDNA clone:dds12b03, 5' ...  1084   0.0    1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...  1082   0.0    1
(BJ414787) Dictyostelium discoideum cDNA clone:ddv20m08, 5' ...  1070   0.0    1
(BJ414779) Dictyostelium discoideum cDNA clone:ddv20k10, 5' ...   969   0.0    1
(BJ328102) Dictyostelium discoideum cDNA clone:dda22o24, 5' ...   969   0.0    1

Homology FC-BS12 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q8T2K9) RecName: Full=Malate synthase;          EC=2.3.3.9;  &A...   367   e-100
CP002344_1386(CP002344|pid:none) Thermaerobacter marianensis DSM...   192   1e-47
CP000909_2910(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   186   1e-45
AP008955_19(AP008955|pid:none) Brevibacillus brevis NBRC 100599 ...   186   1e-45
CP001154_646(CP001154|pid:none) Laribacter hongkongensis HLHK9, ...   185   3e-45
CP002017_963(CP002017|pid:none) Bacillus tusciae DSM 2912, compl...   184   5e-45
AP006840_589(AP006840|pid:none) Symbiobacterium thermophilum IAM...   184   5e-45
FR872651_79(FR872651|pid:none) Waddlia chondrophila 2032/99 anno...   184   6e-45
CP001928_708(CP001928|pid:none) Waddlia chondrophila WSU 86-1044...   184   6e-45
AE016825_3304(AE016825|pid:none) Chromobacterium violaceum ATCC ...   182   2e-44

Homology FC-BS12 vs Genome