Dictyostelium discoideum cDNA Clone FC-AI06

Size:		1138
3' sequence:	HS961205
5' sequence:	AK961220
Whole insert?:	Y
Accession #:	C23661
Remarks:	*

Sequence FC-AI06

GTCATTTGTC AAGCTAAAAG TGGTATGGGT AAAACCGCTG TTTTCGTTTT
ATCAACTTTA CAACAAATTG ATAACAATCC AAATGGTATT ACAACATTAG
TATTATGTAA TACTAGAGAA TTAGCATATC AAATTTGTGA TGAATTTGAT
CGTTTCACCA AATATTTACC AAATGTTAAA ACTGCAGTGA TTTATGGTGG
TATTCCAGTT CAAACCCATA AAGATTTGAT CAAAGAAAAG AAACCAAACA
TTATCATTGG TACCCCAGGT CGTATTTTAC AATTAGCATC TGAAGGTGCA
CTCTCACTCA AAGAGATTAA ACAATTCATT CTTGATGAAT GTGATACCAT
GCTCGAATCA TTGGATATGA GAAAGGATGT ACAAAAGATC TTCAAACTCA
TCCCAGCCAA CAAACAAGTT ATGATGTTTT CAGCTACCCT CTCTGATACC
ATTCGTCCAA TCTGTAAGAA GTTTATGAAC AATCCATTGG AAATCTACAT
CAATGATGGT AGTAAACTCA CTCTCCATGG TCTTCAACAA TACTACGTAC
CAATCACTGA AGAACAAAAG AATAAAAAAC TCATTGAACT CTTGGATTCA
TTAGACTTTA ATCAAGCCGT TATTTTCGTC AAATCTGTTA GACGTGCTGA
TGCCTTAAAT AAGATCCTCC AAGATATTGG TTTCCCATCC ATCTGTATTC
ATCGTGACCT CGATCAAAAG GATCGTATCG AACAATACCG TAAATTCAAA
AACTTTGAAT CTCGTATCAT GGTTGCCACT AATATCTTTG GTCGTGGTAT
CGATATTGAA CGTGTCAATG TCGTCATCAA CTACGATATG GCTGAATCTG
CCGATACCTA TCTTCACAGA GTAGGTCGTG CTGGTCGTTT TGGTACCAAG
GGTTTAGCCA TTTCTTTTGT TCCTTCAAAA GAAGATCCAG TACTTGAACA
AGTTCAATCT AAATTTGTTG TTTCAATTAA AGAACTTGTT GCAACCCCAG
ATCCAAGTAC TTATATGTCT GGTTAAAAAA AAAAAAAAAA AAAAAAAAAA
AACCTTTTTG TTTTAAAATC CATAAAAAAA AAATAAAAAA AAAAATAAAT
AAATATCAAG TTAAATTTTA AATTGTTTTT AAAATATA

Translated Amino Acid Sequence FC-AI06

VICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEFDRFTKYLPNVK
TAVIYGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLES
LDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQ
YYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQK
DRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTK
GLAISFVPSKEDPVLEQVQSKFVVSIKELVATPDPSTYMSG*kkkkkkkknlfvlksikk
k*kkk*iniklnfklflky

Homology FC-AI06 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     2030   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1838   0.0
AFL695 (AFL695Q) /CSM/AF/AFL6-D/AFL695Q.Seq.d/                       1384   0.0
AFJ724 (AFJ724Q) /CSM/AF/AFJ7-A/AFJ724Q.Seq.d/                       1384   0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                       1318   0.0
AFE253 (AFE253Q) /CSM/AF/AFE2-C/AFE253Q.Seq.d/                       1312   0.0
AFJ621 (AFJ621Q) /CSM/AF/AFJ6-A/AFJ621Q.Seq.d/                       1275   0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/                       1235   0.0
AFL501 (AFL501Q) /CSM/AF/AFL5-A/AFL501Q.Seq.d/                       1235   0.0
AFG357 (AFG357Q) /CSM/AF/AFG3-C/AFG357Q.Seq.d/                       1223   0.0

Homology FC-AI06 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AX488925|AX488925.1 Sequence 6225 from Patent WO02053728.          48   3e-20  8
AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library A...    46   1e-15  5
AW724145|AW724145.1 f4b06nm.f2 Neurospora crassa morning cDN...    58   3e-14  2
AW724144|AW724144.1 f4b06nm.f1 Neurospora crassa morning cDN...    58   3e-14  2
AW715373|AW715373.1 g4b02nm.f1 Neurospora crassa morning cDN...    58   3e-14  2
AE001395|AE001395.1 Plasmodium falciparum 3D7 chromosome 2 s...    58   6e-14  5
CA201831|CA201831.1 SCRLFL1008H03.g FL1 Saccharum officinaru...    48   2e-13  4
BM161659|BM161659.1 EST564182 PyBS Plasmodium yoelii yoelii ...    82   4e-13  3
U08102|U08102.1 Caenorhabditis elegans putative RNA helicase...    66   1e-12  2
BG586002|BG586002.1 EST487767 MHAM Medicago truncatula/Glomu...    74   3e-12  2

Homology FC-AI06 vs Protein

Sequences producing significant alignments:                      (bits) Value


GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      459   e-127
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   458   e-127
BT083859_1(BT083859|pid:none) Zea mays full-length cDNA clone ZM...   456   e-127
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   454   e-126
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM...   453   e-126
AL360314_6(AL360314|pid:none) Arabidopsis thaliana DNA chromosom...   453   e-126
BT122787_1(BT122787|pid:none) Picea sitchensis clone WS0461_B17 ...   451   e-125
HB935600_1(HB935600|pid:none) Sequence 68275 from Patent EP20961...   449   e-124
(Q5JK84) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   449   e-124
(Q0JM17) RecName: Full=DEAD-box ATP-dependent RNA helicase 56;  ...   449   e-124

Homology FC-AI06 vs Genome