Dictyostelium discoideum cDNA Clone FC-AG24

Size:		
3' sequence:	
5' sequence:	
Whole insert?:	
Accession #:	
Remarks:	

Sequence FC-AG24

AAGATCTTTC ATGATTCTAT AAGTGGTGGT GCATGGTCGT TCTTAGTTGG
TGGAGCGATT TGTCTGGTCA ATTCCGATAA CGGACGAGAC CTCGACCTGC
TAACTAGTAG TATTTATTAG TCGATATAGA CGATAGCTTT TCTGGGGTTT
GGAATGATTT CGGTCATCTC CTGCTTCAAG GAGTGTGTAG TCTGACTCGA
TAGGTACGAA TTAAAACTTC TTAGAGGGAC TACCTGCCTC AAGCAGGCGG
AAGTCCGAGG CAATAACAGG TCTGTGATGC CCTTAGATAC CTTGGGCCGC
ACGCGCGCTA CAATGTAGGA AACAAAAAGG CTCCTGGTCC GGAAGGATTG
GGTAATCATT TGAATTTCCT ACGTAACTGG GCTTGATCTT TGTAATTATT
GATCATAAAC GAGGAATTCC TTGTAAGCGT AAGTCATTAC CTTATGCTGA
ATATGTCCCT GCCCTTTGTA CACACCGCCC GTCGCTCCTA CCGATCGAAT
GATACGGTAA AGTTAACGGA TCGTTTTATC TGTGGCAACA CTGATATAAA
TTAAAAGTTA TTTAAATCTC ATTGTTTAGA GGAAGGAGAA GTCGTAACAA
GGTATCCGTA GGTGAACCTG CGGATGGATC ATTTTTTATC TTAATATCAT
AAACTTTATG TTTTTTTGGA TAATGGAACT GCTTGCGTAT AAAGAAATTA
GGCTTTTTAA TTAAGGTTTA AGAGTAAGTT GGCTTGTCAG ATTTATTGTC
TAAAAAAAAA AAATAAAAAA AAAAAAAAAA AAAAAA

Translated Amino Acid Sequence FC-AG24

dls*fykwwcmvvlswwsdlsgqfr*rtrprpan**yllvdiddsfsgvwndfghlllqg
vcsltr*vrikts*rdylpqaggsprq*qvcdalrylgpharynvgnkkapgpeglgnhl
nflrnwa*sl*LLIINEEFLVSVSHYLMLNMSLPFVHTARRSYRSNDTVKLTDRFICGNT
DIN*klfkshcleegevvtryp*vnlrmdhfls*yhklyvfldngtacv*rn*af*lrfk
sklacqiyclkkknkkkkkkk

Homology FC-AG24 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-AG24 (FC-AG24Q) /CSM/FC/FC-AG/FC-AG24Q.Seq.d/                     1447   0.0
VFM557 (VFM557Q) /CSM/VF/VFM5-C/VFM557Q.Seq.d/                       1405   0.0
AHO642 (AHO642Q) /CSM/AH/AHO6-B/AHO642Q.Seq.d/                       1390   0.0
VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/                       1388   0.0
VHA586 (VHA586Q) /CSM/VH/VHA5-D/VHA586Q.Seq.d/                       1384   0.0
VHK334 (VHK334Q) /CSM/VH/VHK3-B/VHK334Q.Seq.d/                       1324   0.0
VHE244 (VHE244Q) /CSM/VH/VHE2-B/VHE244Q.Seq.d/                       1310   0.0
VFD795 (VFD795Q) /CSM/VF/VFD7-D/VFD795Q.Seq.d/                       1310   0.0
VHM640 (VHM640Q) /CSM/VH/VHM6-B/VHM640Q.Seq.d/                       1304   0.0
VHK855 (VHK855Q) /CSM/VH/VHK8-C/VHK855Q.Seq.d/                       1294   0.0

Homology FC-AG24 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AY171066|AY171066.1 Dictyostelium discoideum extrachromosoma...  1308   0.0    2
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence.      1259   0.0    1
K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ...  1259   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      658   0.0    4
AC136838|AC136838.17 Medicago truncatula clone mth1-5j15, WO...   125   e-128  9
AF255358|AF255358.1 Lembadion bullinum small subunit ribosom...   157   e-105  5
X65149|X65149.1 O.georgiana 17S ribosomal DNA.                    153   e-103  5
AF100312|AF100312.1 Paramecium duboscqui 18S ribosomal RNA g...   135   e-103  6
M20017|M20017.1 Zamia pumila small-subunit ribosomal RNA gene.    141   e-101  7
X71140|X71140.1 P.teres gene for small subunit 16S-like ribo...   141   e-101  6

Homology FC-AG24 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial...    96   2e-18
AM462492_6(AM462492|pid:none) Vitis vinifera contig VV78X177628....    60   1e-07
CP003008_93(CP003008|pid:none) Myceliophthora thermophila ATCC 4...    47   5e-06
AY914930_1(AY914930|pid:none) Schistosoma japonicum SJCHGC01014 ...    53   2e-05
EU955514_1(EU955514|pid:none) Zea mays clone 1535262 hypothetica...    50   1e-04
AL844509_687(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    50   2e-04
FP929128_285(FP929128|pid:none) Leptosphaeria maculans JN3 lm_Su...    49   3e-04
FQ311869_2(FQ311869|pid:none) Azospirillum lipoferum 4B plasmid ...    42   0.027
AM085146_9(AM085146|pid:none) Magnetospirillum gryphiswaldense m...    42   0.035
FN543107_181(FN543107|pid:none) Curvibacter putative symbiont of...    39   0.23

Homology FC-AG24 vs Genome