Dictyostelium discoideum cDNA Clone FC-AB24

Size:		1005
3' sequence:	AK960913
5' sequence:	AK961227
Whole insert?:	Y
Accession #:	C23702
Remarks:	3'A-stretch

Sequence FC-AB24

AAAAAATGAA TAAATTATTA TTGACACTTG CAACTTTAGC AGTAATTTTT
TCACCAATTA GTTCACAAAA AGCTTTTGGT GTTTGGAATG ATTTAACTAC
CAAATATGTC TCAGTAGGTA TTGTTGATTT AAGTACATCT TTATCAAATG
CTTCTTTTGT CAACACTGGT TTTACTTTCC CATCAAATTA TACTTCAAGT
ACTTATAATG CTGCAAATGG TTTAATTACT TATGTTGCAA CTGAAATGTC
AAGTGGAATT TCATATATGA ATACAATTGA TACCAATACA TGGACATTAT
TTAATAGCTC AATCGCTGAT AATATGAACC TTACCAATCT TGCATATGAT
CAAACCACAT CATCATACAA TATTTTTGCT ACAATTACTA CTGGTGATGG
TTATCTTTAT GTTGTAAAAG TTTCAGCATC AGAAGTTTAT TACAAAACTA
TTGATAAAAT TCCAAATGTT TTCCCAAATT CAACTGCAAC CTATTTAACC
AATAGTAAAT TATATTCAGT TTGTTTTGAA ACTACTTCCT TTTCCATCAA
TTGTAACTAC TATGGATTAG ATGGTACAGT ATTAAACAAA GAAAATTTCA
AAACTTCAAA TCTTGCATAT CCATGGGTTT CAATCTCTTC TCCATACTTA
ATGCAATACC TTCCAAAACA ACAAACCACT CTTTGTATTC TTAACCTCCA
AAATAAAAGC TATGCAAACT TTTATGGTAA ATATCAAATC TTTTGGGTAA
GTGGTAATTC TCAACAATTA GTTAATACCG GTTGGATGAG TTCTTATGAC
ATAGCTAGAG ATAACTTTGG TAGTTTATTT GGTGATTTCA GTTTACCAAG
AGTTTATCAA TTTGGTATGG ATAACGCTGG CCAAATTTCA TACATGGAAA
CCTTTTCAAC TTATAATAAT CAATGGGTTA GAACTCAAAA AACTAACAAC
TTTGTTTTAA ATGCATGGGC TTTTATTTAA AAAAATAATA AAAAAAATTA
TTTAA

Translated Amino Acid Sequence FC-AB24

KMNKLLLTLATLAVIFSPISSQKAFGVWNDLTTKYVSVGIVDLSTSLSNASFVNTGFTFP
SNYTSSTYNAANGLITYVATEMSSGISYMNTIDTNTWTLFNSSIADNMNLTNLAYDQTTS
SYNIFATITTGDGYLYVVKVSASEVYYKTIDKIPNVFPNSTATYLTNSKLYSVCFETTSF
SINCNYYGLDGTVLNKENFKTSNLAYPWVSISSPYLMQYLPKQQTTLCILNLQNKSYANF
YGKYQIFWVSGNSQQLVNTGWMSSYDIARDNFGSLFGDFSLPRVYQFGMDNAGQISYMET
FSTYNNQWVRTQKTNNFVLNAWAFI*knnkknyl

Homology FC-AB24 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-AB24 (FC-AB24Q) /CSM/FC/FC-AB/FC-AB24Q.Seq.d/                     1939   0.0
VSA885 (VSA885Q) /CSM/VS/VSA8-D/VSA885Q.Seq.d/                         40   0.064
VFL246 (VFL246Q) /CSM/VF/VFL2-B/VFL246Q.Seq.d/                         40   0.064
VFF452 (VFF452Q) /CSM/VF/VFF4-C/VFF452Q.Seq.d/                         40   0.064
VFE895 (VFE895Q) /CSM/VF/VFE8-D/VFE895Q.Seq.d/                         40   0.064
VFB665 (VFB665Q) /CSM/VF/VFB6-C/VFB665Q.Seq.d/                         40   0.064
SSC607 (SSC607Q) /CSM/SS/SSC6-A/SSC607Q.Seq.d/                         40   0.064
SSB383 (SSB383Q) /CSM/SS/SSB3-D/SSB383Q.Seq.d/                         40   0.064
AFJ533 (AFJ533Q) /CSM/AF/AFJ5-B/AFJ533Q.Seq.d/                         40   0.064
AFF718 (AFF718Q) /CSM/AF/AFF7-A/AFF718Q.Seq.d/                         40   0.064

Homology FC-AB24 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    38   5e-05  20
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   1e-04  29
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...    38   5e-04  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    38   0.002  14
AL772333|AL772333.5 Mouse DNA sequence from clone RP23-305E1...    46   0.024  7
AL023773|AL023773.1 Human DNA sequence from clone RP3-406C18...    36   0.068  9
AC112325|AC112325.4 Rattus norvegicus clone CH230-119B23, **...    38   0.072  10
AL049915|AL049915.1 Arabidopsis thaliana DNA *** SEQUENCING ...    38   0.084  6
AC133990|AC133990.2 Rattus norvegicus clone CH230-400M17, **...    38   0.096  7
AL953906|AL953906.6 Mouse DNA sequence from clone RP23-109E2...    40   0.10   6

Homology FC-AB24 vs Protein

Sequences producing significant alignments:                      (bits) Value


BA000026_783(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    42   0.053
CP002745_3713(CP002745|pid:none) Collimonas fungivorans Ter331, ...    42   0.053
CP002745_3714(CP002745|pid:none) Collimonas fungivorans Ter331, ...    41   0.091
CP000959_1837(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ...    41   0.12
AY665680_1(AY665680|pid:none) Schistosoma mansoni FTZ-F1-alpha (...    41   0.12
FQ790258_2(FQ790258|pid:none) Botryotinia fuckeliana isolate T4 ...    41   0.12
CP002545_491(CP002545|pid:none) Pedobacter saltans DSM 12145, co...    41   0.12
CP001617_1102(CP001617|pid:none) Lactobacillus plantarum JDM1, c...    40   0.16
BX571966_1469(BX571966|pid:none) Burkholderia pseudomallei strai...    40   0.20
CR940353_126(CR940353|pid:none) Theileria annulata strain Ankara...    40   0.20

Homology FC-AB24 vs Genome