Dictyostelium discoideum cDNA Clone FC-AB02

Size:		1138
3' sequence:	AK961029
5' sequence:	AK961220
Whole insert?:	Y
Accession #:	-
Remarks:	3'no ORF

Sequence FC-AB02

CGATAACGGT TCTGGTATGT GTAAAGCCGG TTTTGCTGGT GATGATGCCC
CACGTGCTGT TTTCCCATCA ATTGTTGGTC GTCCAAGACA CACTGGTGTT
ATGGTCGGTA TGGGTCAAAA AGACTCATAT GTAGGTGATG AAGCCCAATC
AAAGAGAGGT ATCTTAACCC TCAAATACCC AATTGAACAC GGTATCGTTA
CCAACTGGGA TGATATGGAA AAAATCTGGC ATCATACCTT CTACAATGAA
CTCCGTGTTG CCCCAGAAGA ACACCCAGTT CTCTTAACTG AAGCCCCATT
AAATCCAAAG GCCAACAGAG AAAAAATGAC CCAAATTATG TTTGAAACTT
TCAACACCCC AGCTATGTAC GTTGCCATTC AAGCCGTCTT ATCCTTATAT
GCCTCTGGTC GTACCACTGG TATTGTTATG GATTCAGGTG ATGGTGTCTC
CCACACTGTA CCAATCTATG AAGGTTATGC CTTACCACAT GCCATCTTAC
GTTTAGATTT AGCTGGTCGT GATCTTACTG ATTACATGAT GAAAATCTTA
ACTGAACGTG GTTACTCATT CACCACCACT GCTGAAAGAG AAATCGTCAG
AGATATCAAA GAAAAATTAG CTACGTCGCC CTCGACTTTG AAGCTGAAAT
GCAAACTGCT GCCTCATCAT CAGCCCTCGA AAAATCATAC GAATTACCAG
ACGGTCAAGT CATCACCATC GGTAATGAAC GTTTCCGTTG CCCAGAAGCC
CTCTTCCAAC CATCATTCTT AGGTATGGAA TCAGCTGGTA TCCACGAAAC
CACCTACAAC TCCATCATGA AATGTGATGT TGATATCCGT AAAGATTTAT
ACGGTAATGT CGTCTTATCT GGTGGTACAA CTATGTTCCC AGGTATTGCT
GATCGTATGA ACAAAGAATT AACTGCTTTA GCCCCATCAA CCATGAAAAT
TAAAATCATT GCTCCACCAG AACGTAAATA CTCTGTCTGG ATTGGTGGAT
CTATCTTAGC TTCACTCTCA ACTTTCCAAC AAATGTGGAT CTCCAAAGAA
GAATATGACG AATCAGGTCC ATCAATTGTC CACAGAAAAT GTTTCTAAAC
AATTAATAAA TATGTTGTAT TTTATTTAAA CTTAAAAA

Translated Amino Acid Sequence FC-AB02

DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYP
IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP
AMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMM
KILTERGYSFTTTAEREIVRDIKEKLATSPSTLKLKCKLLPHHQPSKNHTNYQTVKSSPS
VMNVSVAQKPSSNHHS*vwnqlvstkppttps*nvmlisvkiytvmssylvvqlcsqvll
iv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhqls
tenvskqlinmlyfi*t*k

Homology FC-AB02 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-AB02 (FC-AB02Q) /CSM/FC/FC-AB/FC-AB02Q.Seq.d/                     2256   0.0
VFI535 (VFI535Q) /CSM/VF/VFI5-B/VFI535Q.Seq.d/                       2228   0.0
VFE485 (VFE485Q) /CSM/VF/VFE4-D/VFE485Q.Seq.d/                       2228   0.0
VHQ271 (VHQ271Q) /CSM/VH/VHQ2-C/VHQ271Q.Seq.d/                       2222   0.0
VFG241 (VFG241Q) /CSM/VF/VFG2-B/VFG241Q.Seq.d/                       2220   0.0
SFD514 (SFD514Q) /CSM/SF/SFD5-A/SFD514Q.Seq.d/                       2198   0.0
VFG715 (VFG715Q) /CSM/VF/VFG7-A/VFG715Q.Seq.d/                       2196   0.0
VFD830 (VFD830Q) /CSM/VF/VFD8-B/VFD830Q.Seq.d/                       2196   0.0
VFC862 (VFC862Q) /CSM/VF/VFC8-C/VFC862Q.Seq.d/                       2196   0.0
VFB762 (VFB762Q) /CSM/VF/VFB7-C/VFB762Q.Seq.d/                       2196   0.0

Homology FC-AB02 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      1168   0.0    2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...  1144   0.0    2
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        1110   0.0    2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 ma...  1110   0.0    2
U25660|U25660.1 Dictyostelium discoideum actin gene, partial...  1078   0.0    2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...  1055   0.0    2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 ma...   975   0.0    10
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 ma...   975   0.0    11
X03282|X03282.1 dictyostelium discoideum gene for actin A12.      928   0.0    2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...   904   0.0    2

Homology FC-AB02 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54H30) RecName: Full=Major actin; AltName: Full=Actin A1; AltN...   423   0.0
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   423   0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   423   0.0
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   422   0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        417   0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   415   0.0
AK369759_1(AK369759|pid:none) Hordeum vulgare subsp. vulgare mRN...   419   0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   419   0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          417   0.0
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   418   0.0

Homology FC-AB02 vs Genome