Homology FC-IC1620 vs DNA
Query= FC-IC1620 (FC-IC1620Q) /CSM/FC-IC/FC-IC1620Q.Seq.d/
/CSM/FC-IC/FC-IC1620Q.Seq.d/
(1617 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq;
ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
/db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/a/new_est_btra1.seq; est_cele1.seq; est_crei1.seq;
/db/DDBJNEW.DATA/a/new_est_crei1.seq; est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/a/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/a/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/a/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_stro1.seq;
/db/DDBJNEW.DATA/a/new_est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/a/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
30,679,270 sequences; T,251,742,201 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gen... 1289 0.0 4
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) co... 36 2e-05 16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma... 40 0.007 14
CG110013|CG110013.1 PUIMI40TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.032 2
CC433814|CC433814.1 PUHOU87TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.045 2
CG111380|CG111380.1 PUFRH74TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.046 2
AE006338|AE006338.1 Lactococcus lactis subsp. lactis IL1403 ... 42 0.15 4
BW128099|BW128099.1 Ciona intestinalis cDNA, clone:rcign016n... 36 0.54 2
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, comple... 32 1.2 16
BX649276|BX649276.2 Zebrafish DNA sequence *** SEQUENCING IN... 36 1.4 9
AF323668|AF323668.1 Bacteriophage bIL285, complete genome. 42 1.5 4
Z49272|Z49272.1 H.pylori gene for RepA protein (putative). 46 1.5 1
AC102494|AC102494.6 Mus musculus chromosome 7, clone RP24-56... 42 1.9 7
AC090141|AC090141.9 Homo sapiens chromosome 8, clone RP11-14... 40 2.3 5
AC016059|AC016059.2 Homo sapiens chromosome 11 clone RP11-29... 38 2.4 2
AX344569|AX344569.1 Sequence 20 from Patent WO0200932. 34 2.7 11
AC112067|AC112067.6 Rattus norvegicus clone CH230-323G10, WO... 40 4.0 9
AC009479|AC009479.4 Homo sapiens BAC clone RP11-278L6 from Y... 34 4.7 7
AC133460|AC133460.1 Homo sapiens chromosome 11 clone CTD-202... 38 4.7 3
M69197|M69197.1 Human haptoglobin and haptoglobin-related pr... 36 5.7 4
AC073665|AC073665.1 Mus musculus clone CT7-122J17, WORKING D... 44 6.0 1
AC145932|AC145932.2 Gallus gallus chromosome UNK clone CH261... 44 6.0 1
AC017095|AC017095.7 Homo sapiens BAC clone RP11-516C4 from 2... 44 6.0 1
AC115026|AC115026.3 Mus musculus clone RP24-238A19, WORKING ... 44 6.0 1
AC092760|AC092760.2 Papio anubis clone RP41-386C24, WORKING ... 36 6.6 6
AL928725|AL928725.15 Zebrafish DNA sequence *** SEQUENCING I... 32 6.7 10
AL590134|AL590134.7 Zebrafish DNA sequence from clone RP71-1... 34 8.1 8
AL138714|AL138714.9 Human DNA sequence from clone RP11-121J7... 38 9.0 8
>AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene,
complete cds.
Length = 3457
Score = 1289 bits (650), Expect(4) = 0.0
Identities = 652/653 (99%)
Strand = Plus / Minus
Query: 921 ccaattagcgcatttacaacatttgaacgtgagaaaatcaatgcttnatgtgcaaaaatt 980
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1962 ccaattagcgcatttacaacatttgaacgtgagaaaatcaatgctttatgtgcaaaaatt 1903
Query: 981 gatctgccttcaacgatgaattgaatatcagatagaatctttttagtaaagaatagctct 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 gatctgccttcaacgatgaattgaatatcagatagaatctttttagtaaagaatagctct 1843
Query: 1041 ttactagtttcacccaattggtcatttaagaaagtgccaatcgatggattcaaatcttca 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 ttactagtttcacccaattggtcatttaagaaagtgccaatcgatggattcaaatcttca 1783
Query: 1101 ttaccacccaacacattcttacaagcacttgctaaatacttgaagccgacactctctgcc 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 ttaccacccaacacattcttacaagcacttgctaaatacttgaagccgacactctctgcc 1723
Query: 1161 aatgcaattgtctcttgaagttggtcattcttatcaaggtaattcaacacaccagtgtaa 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 aatgcaattgtctcttgaagttggtcattcttatcaaggtaattcaacacaccagtgtaa 1663
Query: 1221 agaaactcaatgaatctattgaaaacacgacgatttattgaactgtcgattgagatctcg 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 agaaactcaatgaatctattgaaaacacgacgatttattgaactgtcgattgagatctcg 1603
Query: 1281 acaaattcaccacttgatttagtgccgtcatcattcttttcgtttggtttaattgtaaca 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 acaaattcaccacttgatttagtgccgtcatcattcttttcgtttggtttaattgtaaca 1543
Query: 1341 ctacgaatatttttaaccttaccctcatttaaatcatccaatttgaactcagcttggtca 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 ctacgaatatttttaaccttaccctcatttaaatcatccaatttgaactcagcttggtca 1483
Query: 1401 gaggataatgtgtatccaaatacccttctaaagaattcagatgctgagcataatataaca 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 gaggataatgtgtatccaaatacccttctaaagaattcagatgctgagcataatataaca 1423
Query: 1461 cgatgtgcataaactggtctctcttcaaaaaatgtaaatttaacatcactaaatgattca 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 cgatgtgcataaactggtctctcttcaaaaaatgtaaatttaacatcactaaatgattca 1363
Query: 1521 ctatttaatgtttctctcatctctttatcataagaacttgtaataatatcaat 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 ctatttaatgtttctctcatctctttatcataagaacttgtaataatatcaat 1310
Score = 1187 bits (599), Expect(2) = 0.0
Identities = 599/599 (100%)
Strand = Plus / Minus
Query: 1 acaaatattctaaaatcgccatgaatgaatcaaaagttacatcatcagacatttcaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 acaaatattctaaaatcgccatgaatgaatcaaaagttacatcatcagacatttcaacct 1989
Query: 61 tgccttctctttcaatgaaatttctaccaattagcgcatttacaacatttgaacgtgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 tgccttctctttcaatgaaatttctaccaattagcgcatttacaacatttgaacgtgaga 1929
Query: 121 aaatcaatgctttatgtgcaaaaattgatctgccttcaacgatgaattgaatatcagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1928 aaatcaatgctttatgtgcaaaaattgatctgccttcaacgatgaattgaatatcagata 1869
Query: 181 gaatctttttagtaaagaatagctctttactagtttcacccaattggtcatttaagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1868 gaatctttttagtaaagaatagctctttactagtttcacccaattggtcatttaagaaag 1809
Query: 241 tgccaatcgatggattcaaatcttcattaccacccaacacattcttacaagcacttgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1808 tgccaatcgatggattcaaatcttcattaccacccaacacattcttacaagcacttgcta 1749
Query: 301 aatacttgaagccgacactctctgccaatgcaattgtctcttgaagttggtcattcttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 aatacttgaagccgacactctctgccaatgcaattgtctcttgaagttggtcattcttat 1689
Query: 361 caaggtaattcaacacaccagtgtaaagaaactcaatgaatctattgaaaacacgacgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 caaggtaattcaacacaccagtgtaaagaaactcaatgaatctattgaaaacacgacgat 1629
Query: 421 ttattgaactgtcgattgagatctcgacaaattcaccacttgatttagtgccgtcatcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 ttattgaactgtcgattgagatctcgacaaattcaccacttgatttagtgccgtcatcat 1569
Query: 481 tcttttcgtttggtttaattgtaacactacgaatatttttaaccttaccctcatttaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 tcttttcgtttggtttaattgtaacactacgaatatttttaaccttaccctcatttaaat 1509
Query: 541 catccaatttgaactcagcttggtcagaggataatgtgtatccaaatacccttctaaag 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 catccaatttgaactcagcttggtcagaggataatgtgtatccaaatacccttctaaag 1450
Score = 343 bits (173), Expect(2) = 0.0
Identities = 178/180 (98%)
Strand = Plus / Minus
Query: 600 gaattcagatgctgagcataatataacacgatgtgcataaactggtctctcttcaaaaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 gaattcagatgctgagcataatataacacgatgtgcataaactggtctctcttcaaaaaa 1391
Query: 660 tgtaaatttaacatcactaaatgattcactatttaatggttctctcatctctttatcata 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1390 tgtaaatttaacatcactaaatgattcactatttaatgtttctctcatctctttatcata 1331
Query: 720 agaacttgtaataatatcaatccatggtgctttacctgctggtggcatnactggtggaat 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1330 agaacttgtaataatatcaatccatggtgctttacctgctggtggcataactggtggaat 1271
Score = 99.6 bits (50), Expect(4) = 0.0
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 834 caaatnttctaaaatcgcccagaatgaatcaaaagttacatcatcagacatttcaacctt 893
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2047 caaatattctaaaatcgccatgaatgaatcaaaagttacatcatcagacatttcaacctt 1988
Query: 894 g 894
|
Sbjct: 1987 g 1987
Score = 85.7 bits (43), Expect(4) = 0.0
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 1575 ccatggtgctttacctgctggtggcataactggtggaattggt 1617
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 ccatggtgctttacctgctggtggcataactggtggaattggt 1267
Score = 42.1 bits (21), Expect(4) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 901 tctttcaatgaaatttctacc 921
|||||||||||||||||||||
Sbjct: 1981 tctttcaatgaaatttctacc 1961
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 34,128,978
Number of Sequences: 30679270
Number of extensions: 34128978
Number of successful extensions: 2510591
Number of sequences better than 10.0: 56
length of query: 1617
length of database: T,251,742,201
effective HSP length: 23
effective length of query: 1594
effective length of database: S,546,118,991
effective search space: 56660513671654
effective search space used: 56660513671654
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home