Homology FC-IC1431 vs Protein
Query= FC-IC1431 (FC-IC1431Q) /CSM/FC-IC/FC-IC1431Q.Seq.d/
(430 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP001230_1127(CP001230|pid:none) Persephonella marina EX-H1, com... 47 5e-04
GU474919_1(GU474919|pid:none) Uncultured Spirochaetales bacteriu... 46 6e-04
GU474845_2(GU474845|pid:none) Uncultured Verrucomicrobiales bact... 34 0.046
AC151709_9(AC151709|pid:none) Medicago truncatula clone mth2-31g... 30 0.10
AC146792_21(AC146792|pid:none) Medicago truncatula clone mth2-32... 36 0.80
AM502234_12(AM502234|pid:none) Leishmania infantum chromosome 16... 35 1.8
FR799603_12(FR799603|pid:none) Leishmania donovani BPK282A1 comp... 35 1.8
CT005255_12(CT005255|pid:none) Leishmania major strain Friedlin ... 35 1.8
BA000001_226(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c... 30 4.2
AM494953_12(AM494953|pid:none) Leishmania braziliensis chromosom... 33 6.7
CP001100_976(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 32 8.8
AM085146_11(AM085146|pid:none) Magnetospirillum gryphiswaldense ... 32 8.8
>CP001230_1127(CP001230|pid:none) Persephonella marina EX-H1,
complete genome. &CP001230_1898(CP001230|pid:none)
Length = 189
Score = 46.6 bits (109), Expect = 5e-04
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -1
Query: 424 PYTSCCHFAESCVFIKQSPPLLYCD----LHFLQQRLSFSRSYGVILPSSFRIIHST 266
P+TS FA+ CVF KQSPP +CD L+ SRSYGV LPSS R + T
Sbjct: 129 PHTSSFEFAQCCVFGKQSPPPGFCDPLPHLNGTACGHPLSRSYGVNLPSSLRRVTPT 185
Score = 46.6 bits (109), Expect = 5e-04
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -1
Query: 199 PYTSCCHFAESCVFIKQSPPLLYCD----LHFLQQRLSFSRSYGVILPSSFRIIHST 41
P+TS FA+ CVF KQSPP +CD L+ SRSYGV LPSS R + T
Sbjct: 129 PHTSSFEFAQCCVFGKQSPPPGFCDPLPHLNGTACGHPLSRSYGVNLPSSLRRVTPT 185
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,246,243,733
Number of extensions: 26199482
Number of successful extensions: 39216
Number of sequences better than 10.0: 12
Number of HSP's gapped: 39194
Number of HSP's successfully gapped: 25
Length of query: 143
Length of database: 1,732,582,204
Length adjustment: 106
Effective length of query: 37
Effective length of database: 1,165,565,626
Effective search space: 43125928162
Effective search space used: 43125928162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
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