Homology FC-IC1296 vs DNA
Query= FC-IC1296 (FC-IC1296Q) /CSM/FC-IC/FC-IC1296Q.Seq.d/
/CSM/FC-IC/FC-IC1296Q.Seq.d/
(559 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq;
ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
/db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/a/new_est_btra1.seq; est_cele1.seq; est_crei1.seq;
/db/DDBJNEW.DATA/a/new_est_crei1.seq; est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/a/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/a/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/a/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_stro1.seq;
/db/DDBJNEW.DATA/a/new_est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/a/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
30,356,762 sequences; S,976,024,753 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
X94341|X94341.1 D.discoideum mRNA for unknown protein with h... 280 e-133 3
U48706|U48706.1 Dictyostelium discoideum small aggregate for... 50 1e-08 2
AC015690|AC015690.3 Homo sapiens chromosome 11 clone RP11-34... 40 2e-04 4
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, comple... 34 0.17 11
AC099950|AC099950.1 Mus musculus clone RP23-19H3, LOW-PASS S... 38 0.29 2
AC133326|AC133326.2 Rattus norvegicus clone CH230-377C13, **... 38 0.34 5
AC128338|AC128338.3 Rattus norvegicus clone CH230-47L24, WOR... 34 0.46 8
AC138059|AC138059.3 Homo sapiens chromosome 3 clone RP11-195... 46 0.51 1
AC018352|AC018352.23 Homo sapiens 3 BAC RP11-124O2 (Roswell ... 46 0.51 1
AC138467|AC138467.2 Homo sapiens clone RP11-124O2, WORKING D... 46 0.51 1
AC018353|AC018353.14 Homo sapiens chromosome 3 clone RP11-12... 46 0.51 1
AC101150|AC101150.1 Mus musculus clone RP23-171G6, LOW-PASS ... 36 0.87 3
AC122726|AC122726.19 Medicago truncatula clone mth2-23o24, W... 34 1.4 5
AC123819|AC123819.2 Mus musculus BAC clone RP23-460M11 from ... 34 1.7 5
BX469897|BX469897.6 Zebrafish DNA sequence from clone CH211-... 40 1.7 3
AC099233|AC099233.7 Rattus norvegicus clone CH230-201I8, WOR... 44 2.0 1
U40413|U40413.2 Caenorhabditis elegans cosmid C18B2, complet... 44 2.0 1
AW480390|AW480390.1 31067 MARC 2PIG Sus scrofa cDNA 5', mRNA... 44 2.0 1
AP006131|AP006131.1 Lotus corniculatus var. japonicus genomi... 44 2.0 1
AI555332|AI555332.1 UI-R-C2p-qw-c-04-0-UI.s1 UI-R-C2p Rattus... 44 2.0 1
X66738|X66738.1 S.pombe cen1 central region centromere DNA. 34 2.1 3
AL162459|AL162459.2 Arabidopsis thaliana DNA chromosome 3, B... 32 2.4 6
BX005245|BX005245.14 Zebrafish DNA sequence *** SEQUENCING I... 40 2.9 4
AC118146|AC118146.5 Rattus norvegicus clone CH230-237I20, **... 38 3.3 4
AC114416|AC114416.1 Mus musculus clone RP23-344K7, LOW-PASS ... 36 3.4 2
AC132428|AC132428.2 Mus musculus chromosome UNK clone RP23-2... 36 4.9 5
Z92797|Z92797.1 Caenorhabditis elegans fosmid H25P06. 34 6.1 3
AC094318|AC094318.7 Rattus norvegicus clone CH230-3I12, *** ... 30 6.7 8
AL391783|AL391783.1 S.pombe chromosome I cosmid c1856. 34 7.1 3
AC095666|AC095666.6 Rattus norvegicus clone CH230-8O14, WORK... 36 7.2 7
AC006988|AC006988.3 Homo sapiens BAC clone RP11-174I14 from ... 38 7.9 3
AL139397|AL139397.8 Human DNA sequence from clone RP11-445O1... 42 7.9 1
AC115898|AC115898.4 Mus musculus clone RP24-444C13, WORKING ... 42 7.9 1
AP004677|AP004677.1 Oryza sativa (japonica cultivar-group) g... 42 7.9 1
AC113001|AC113001.4 Mus musculus clone RP23-184M4, WORKING D... 42 7.9 1
AL462158|AL462158.1 T. brucei sheared genomic DNA clone 112e... 42 7.9 1
AC004217|AC004217.1 Homo sapiens 12 PAC RPCI3-521E19 (Roswel... 42 7.9 1
AP004737|AP004737.1 Oryza sativa (japonica cultivar-group) g... 42 7.9 1
AC096639|AC096639.2 Homo sapiens chromosome 1 clone RP11-323... 42 7.9 1
AL461673|AL461673.1 T. brucei sheared genomic DNA clone 113c... 42 7.9 1
AL844869|AL844869.5 Mouse DNA sequence from clone RP23-437K1... 30 9.3 7
AC091570|AC091570.1 Homo sapiens chromosome 15 clone RP4-813... 32 9.6 3
>X94341|X94341.1 D.discoideum mRNA for unknown protein with homology
to spore germination protein.
Length = 754
Score = 280 bits (141), Expect(2) = e-133
Identities = 147/149 (98%)
Strand = Plus / Plus
Query: 411 actgagggaacttatattgtttatcaaaatgttcttgtttatgcatatacaatagtatta 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actgagggaacttatattgtttatcaaaatgttcttgtttatgcatatacaatagtatta 447
Query: 471 tcagtaaatcaaactaatactataaatcaatataacccaggtatgaatttgagatatatc 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcactaaatcaaactaatactataaatcaatataacccaggtatgaatttgagatatatc 507
Query: 531 caacaaatagatcgtgctgttatgtttgt 559
|||||||||||||| ||||||||||||||
Sbjct: 508 caacaaatagatcgagctgttatgtttgt 536
Score = 264 bits (133), Expect(3) = e-111
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 126 actgagggaacttatattgtttatcaaaatgtgcttgtttatgcatatacaatagtatta 185
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 388 actgagggaacttatattgtttatcaaaatgttcttgtttatgcatatacaatagtatta 447
Query: 186 tcactaaatcaaactaatactataaatcaatataacccaagtatgaatttgagatatatc 245
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 tcactaaatcaaactaatactataaatcaatataacccaggtatgaatttgagatatatc 507
Query: 246 caacaaattgatcgtgctgttatgtttgt 274
|||||||| ||||| ||||||||||||||
Sbjct: 508 caacaaatagatcgagctgttatgtttgt 536
Score = 226 bits (114), Expect(2) = e-133
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 285 actgaaattaaggcaagtgcatcagcagggttctttggttgtgaagcatcactcgaagtg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgaaattaaggcaagtgcatcagcagggttctttggttgtgaagcatcactcgaagtg 321
Query: 345 accactggtttcgaatatgaagaaactgttacatcagagacaactcacacatgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 accactggtttcgaatatgaagaaactgttacatcagagacaactcacacatgg 375
Score = 143 bits (72), Expect(3) = e-111
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 actgaaattaaggcaagtgcatcagcagggttctttggttgcaaagcatcactcgaagtg 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 actgaaattaaggcaagtgcatcagcagggttctttggttgtgaagcatcactcgaagtg 321
Query: 61 accactgggttctaatatgaagaaactg 88
|||||||| ||| |||||||||||||||
Sbjct: 322 accactggtttcgaatatgaagaaactg 349
Score = 46.1 bits (23), Expect(3) = e-111
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 catcagagacaactcacacatgg 113
|||||||||||||||||||||||
Sbjct: 353 catcagagacaactcacacatgg 375
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 12,191,846
Number of Sequences: 30356762
Number of extensions: 12191846
Number of successful extensions: 925693
Number of sequences better than 10.0: 86
length of query: 559
length of database: S,976,024,753
effective HSP length: 22
effective length of query: 537
effective length of database: S,308,175,989
effective search space: 18960490506093
effective search space used: 18960490506093
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home