Dictyostelium discoideum cDNA Clone FC-IC1168

Sequence FC-IC1168

ACTTGTATGC TATCGATCTC CTAACATATA TTTAGCCTTG GATGAATCTT
ATCACCCATT CAGAATGCAA TTTCAGACAT TCCTACTCGT GGAGCTAATG
GCAAAGTCCA ACTGTTGTGA TACTGCGAAC AGGGTTATCA CCTTCTACNA
CTCGAAATTC CAAACGGAAT TAGCAGTCAC AACAGCGGGC TCCATCAGTC
CATAGGTCAC ATCACCTAAC CTCGAAGAGA TCCAGGTTTG AACCTTGGGC
TATTCCGTCT TCACTCGCCG TTACTGACGG AATCCTAGTT AGTTTCTTTT
CCTCCGCTTA CTGATATGCT TAAGTTCAAC GGGTAATCTT ACAAAGGTGA
GGCGGAATTA CAATAATCTT TCGGACAAGT ---------- CCAGTGTAAT
GGATATCTGC AGAATTCGGC TTAGCGTGGT CGCGGCCGAG GTACTTGTAT
GCTATCGATC TCCTAACATA TATTTAGCCT TGGATGAATC TTATCACCCA
TTCAGAATGC AATTTCAGAC ATTCCTACTC GTGGAGCTAA TGGCAAAGTC
CAACTGTTGT GATACTGCGA ACAGGGTTAT CACCTTCTAC GACTCGAAAT
TCCAAACGGA ATTAGCAGTC ACAACAGCGG GCTCCATCAG TCCATAGGTC
ACATCACCTA ACCTCGAAGA GATCCAGGTT TGAACCTTGG GCTATTCCGT
CTTCACTCGC CGTTACTGAC GGAATCCTAG TTAGTTTCTT TTCCTCCGCT
TACTGATATG CTTAAGTTCA GCGGGTAATC TTACAAAGGT GAGGCGGAAT
TAGAATAATC TTTCGGACAA GT

Translated Amino Acid Sequence FC-IC1168

lvcyrspniylaldesyhpfrmqfqtfllvelmaksnccdtanrvitfyxskfqtelavt
tagsisp*vtspnleeiqv*tlgysvftrry*rnps*FLFLRLLICLSSTGNLTKVRRNY
NNLSDK---

---SVMDICRIRLSVVAAEVLVCYRSPNIYLALDESYHPFRMQFQTFLLVELMAKSNCCD
TANRVITFYDSKFQTELAVTTAGSISP*vtspnleeiqv*tlgysvftrry*rnps*flf
lrlliclssagnltkvrrn*nnlsdk

Homology FC-IC1168 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


FC-IC1168 (FC-IC1168Q) /CSM/FC-IC/FC-IC1168Q.Seq.d/                  1564   0.0
VHK396 (VHK396Q) /CSM/VH/VHK3-D/VHK396Q.Seq.d/                        759   0.0
FC-IC1475 (FC-IC1475Q) /CSM/FC-IC/FC-IC1475Q.Seq.d/                   753   0.0
FC-IC0461 (FC-IC0461Q) /CSM/FC-IC/FC-IC0461Q.Seq.d/                   741   0.0
CHI777 (CHI777Q) /CSM/CH/CHI7-D/CHI777Q.Seq.d/                        716   0.0
SHI761 (SHI761Q) /CSM/SH/SHI7-C/SHI761Q.Seq.d/                        714   0.0
CHN482 (CHN482Q) /CSM/CH/CHN4-D/CHN482Q.Seq.d/                        714   0.0
FC-IC0540 (FC-IC0540Q) /CSM/FC-IC/FC-IC0540Q.Seq.d/                   706   0.0
CHK282 (CHK282Q) /CSM/CH/CHK2-D/CHK282Q.Seq.d/                        706   0.0
VFK410 (VFK410Q) /CSM/VF/VFK4-A/VFK410Q.Seq.d/                        698   0.0

Homology FC-IC1168 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AY171066|AY171066.1 Dictyostelium discoideum extrachromosoma...   759   0.0    2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      743   0.0    1
M19231|M19231.1 Slime mold (D.discoideum) 28S large subunit ...   696   0.0    1
AC122172|AC122172.25 Medicago truncatula clone mth2-27e7, WO...   103   3e-70  8
AC136838|AC136838.17 Medicago truncatula clone mth1-5j15, WO...   103   4e-45  7
AC111945|AC111945.3 Rattus norvegicus clone CH230-209C9, ***...    90   4e-45  3
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PR...   105   3e-38  2
AC137509|AC137509.11 Medicago truncatula clone mth2-20l21, W...   103   7e-38  4
AC112088|AC112088.5 Rattus norvegicus clone CH230-263A20, **...   101   1e-37  2
AC112459|AC112459.5 Rattus norvegicus clone CH230-169J23, **...   101   1e-37  2

Homology FC-IC1168 vs Protein

Sequences producing significant alignments:                      (bits) Value


HE601628_128(HE601628|pid:none) Schistosoma mansoni strain Puert...    44   0.013
AE010299_1578(AE010299|pid:none) Methanosarcina acetivorans str....    38   0.72
CP000930_2260(CP000930|pid:none) Heliobacterium modesticaldum Ic...    37   1.6
GU474883_37(GU474883|pid:none) Uncultured delta proteobacterium ...    35   4.7
GU474879_27(GU474879|pid:none) Uncultured delta proteobacterium ...    35   4.7
GU474881_38(GU474881|pid:none) Uncultured Acidobacteriales bacte...    35   4.7
GU474914_23(GU474914|pid:none) Uncultured delta proteobacterium ...    35   6.1

Homology FC-IC1168 vs Genome