Homology FC-IC1129 vs DNA
Query= FC-IC1129 (FC-IC1129Q) /CSM/FC-IC/FC-IC1129Q.Seq.d/
/CSM/FC-IC/FC-IC1129Q.Seq.d/
(1300 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq;
ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
/db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
/db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; /db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/b/new_est_btra1.seq; est_cele1.seq; est_crei1.seq;
/db/DDBJNEW.DATA/b/new_est_crei1.seq; est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/b/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/b/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/b/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_stro1.seq;
/db/DDBJNEW.DATA/b/new_est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/b/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
/db/DDBJNEW.DATA/b/new_est_rest1.seq
30,356,425 sequences; S,971,923,061 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
L36202|L36202.1 Dictyostelium discoideum fimbrin (fimA) mRNA... 680 0.0 3
BX567934|BX567934.1 Glossina morsitans morsitans (Tseatse fl... 54 0.005 1
BM058495|BM058495.1 2193-02 hindgut and Malpighian tubule su... 50 0.014 2
BE239048|BE239048.1 MD0704 Meloidogyne incognita J2 (#MD99-1... 52 0.020 1
CB143721|CB143721.1 K-EST0197822 L16HLK3 Homo sapiens cDNA c... 38 0.069 3
AA226818|AA226818.1 zr20a04.r1 Stratagene NT2 neuronal precu... 38 0.094 3
BF724876|BF724876.1 bx09f12.y1 Human Iris cDNA (Un-normalize... 38 0.14 3
BE867815|BE867815.1 601443781F1 NIH_MGC_65 Homo sapiens cDNA... 38 0.14 3
AU127916|AU127916.1 Homo sapiens cDNA clone:NT2RP2002345, 5'... 38 0.16 3
BE541512|BE541512.1 601067970F1 NIH_MGC_10 Homo sapiens cDNA... 38 0.16 3
AU128700|AU128700.1 Homo sapiens cDNA clone:NT2RP2003992, 5'... 38 0.21 3
CD110407|CD110407.1 AGENCOURT_13980517 NIH_MGC_187 Homo sapi... 38 0.21 3
AU132391|AU132391.1 Homo sapiens cDNA clone:NT2RP3004333, 5'... 38 0.22 3
BU177098|BU177098.1 AGENCOURT_7931379 NIH_MGC_72 Homo sapien... 38 0.23 3
BX431978|BX431978.1 human full-length cDNA 5-PRIME end of cl... 38 0.24 3
AU132624|AU132624.1 Homo sapiens cDNA clone:NT2RP4000217, 5'... 38 0.24 3
BG180458|BG180458.1 602331353F1 NIH_MGC_91 Homo sapiens cDNA... 38 0.28 3
BG168505|BG168505.1 602339656F1 NIH_MGC_89 Homo sapiens cDNA... 38 0.31 3
I08151|I08151.1 Sequence 1 from Patent EP 0345726. 38 0.84 3
M22299|M22299.1 Human T-plastin polypeptide mRNA, complete c... 38 0.84 3
CF344488|CF344488.1 AGENCOURT_15222409 NICHD_XGC_Swb1 Silura... 46 1.2 1
BX551028|BX551028.1 Glossina morsitans morsitans (Tseatse fl... 46 1.2 1
BC008588|BC008588.1 Homo sapiens, Similar to plastin 3 (T is... 38 1.5 3
BC039049|BC039049.1 Homo sapiens plastin 3 (T isoform), mRNA... 38 2.3 3
BC056898|BC056898.1 Homo sapiens plastin 3 (T isoform), mRNA... 38 2.4 3
BZ816467|BZ816467.1 PUFDY07TB ZM_0.6_1.0_KB Zea mays genomic... 34 3.0 2
AL359237|AL359237.4 Human chromosome 14 DNA sequence BAC R-1... 44 4.8 1
AC109781|AC109781.6 Homo sapiens 3 BAC RP11-317G9 (Roswell P... 44 4.8 1
AC143248|AC143248.1 Macaca mulatta clone CH250-270N20, *** S... 44 4.8 1
BF931263|BF931263.1 IL5-NT0227-131200-332-g05 NT0227 Homo sa... 38 9.0 2
AC136946|AC136946.1 Homo sapiens chromosome 16 clone RP11-35... 42 19 1
CA171486|CA171486.1 SCSBSB1050E12.g SB1 Saccharum officinaru... 42 19 1
CD398956|CD398956.1 Gm_ck20356 Soybean induced by Salicylic ... 42 19 1
CC365114|CC365114.1 PUHMH63TB ZM_0.6_1.0_KB Zea mays genomic... 42 19 1
AW395042|AW395042.1 sh38g04.y1 Gm-c1017 Glycine max cDNA clo... 42 19 1
CD391339|CD391339.1 Gm_ck10215 Soybean induced by Salicylic ... 42 19 1
CD406289|CD406289.1 Gm_ck31075 Soybean induced by Salicylic ... 42 19 1
CD408869|CD408869.1 Gm_ck35520 Soybean induced by Salicylic ... 42 19 1
BX546482|BX546482.3 Zebrafish DNA sequence *** SEQUENCING IN... 42 19 1
AW945350|AW945350.1 PM3-EN0004-120500-003-g06 EN0004 Homo sa... 42 19 1
AC107398|AC107398.4 Homo sapiens BAC clone RP11-731J8 from 4... 42 19 1
BF780449|BF780449.1 602103969F1 NCI_CGAP_Kid14 Mus musculus ... 42 19 1
AW396336|AW396336.1 sh03d01.y1 Gm-c1026 Glycine max cDNA clo... 42 19 1
BF324238|BF324238.1 sr91d11.y1 Gm-c1047 Glycine max cDNA clo... 42 19 1
>L36202|L36202.1 Dictyostelium discoideum fimbrin (fimA) mRNA,
complete cds.
Length = 1926
Score = 680 bits (343), Expect(3) = 0.0
Identities = 357/364 (98%)
Strand = Plus / Minus
Query: 261 tgagatattcaaagcanaggtttcnacaccagcatcctttggtgcgatttgtttcaaaag 320
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 995 tgagatattcaaagcagaggtttcgacaccagcatcctttggtgcgatttgtttcaaaag 936
Query: 321 gattgtataacattctgaatctttaatatcaccagagaaattctttactcttctttgtga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gattgtataacattctgaatctttaatatcaccagagaaattctttactcttctttgtga 876
Query: 381 gccagcagcggctaaatgataattgaaccatctcaataagatctcttcaactggaagttt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gccagcagcggctaaatgataattgaaccatctcaataagatctcttcaactggaagttt 816
Query: 441 caataaatcttcaattgtttcaccatcatgtaaaagacgatacaactctggatgattagt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 caataaatcttcaattgtttcaccatcatgtaaaagacgatacaactctggatgattagt 756
Query: 501 taaatnaatacgtgcgaataaaccantcttnataattngccatgttaaacccataattaa 560
||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 755 taaattaatacgtgcgaataaaccaatcttaataatttgccatgttaaacccataattaa 696
Query: 561 atgagctctaccttcaactaaatcacctgcnccaatattaacaacattacaaccaattgc 620
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 695 atgagctctaccttcaactaaatcacctgcaccaatattaacaacattacaaccaattgc 636
Query: 621 tttt 624
||||
Sbjct: 635 tttt 632
Score = 565 bits (285), Expect(3) = 0.0
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 655 accttcgtagagattgttaacgaatggatctacacntaaagaattcatccaattacggaa 714
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1253 accttcgtagagattgttaacgaatggatctacacctaaagaattcatccaattacggaa 1194
Query: 715 agtcttttcttcacgagtctcttcaattataacaacatcttcaactggttccaatgctgg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 agtcttttcttcacgagtctcttcaattataacaacatcttcaactggttccaatgctgg 1134
Query: 775 atgagtattgaaaagattggcaacgaatgctaaattaagtttttggaaaccagttacgat 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 atgagtattgaaaagattggcaacgaatgctaaattaagtttttggaaaccagttacgat 1074
Query: 835 atcctttggtttaaggaacttcttacaacctaatttatcggcattctctaaaactttaac 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 atcctttggtttaaggaacttcttacaacctaatttatcggcattctctaaaactttaac 1014
Query: 895 agcacgttgatctaaatttgagatattcaaagcagaggtttcgacacc 942
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 agcacgttgatctaaatttgagatattcaaagcagaggtttcgacacc 966
Score = 488 bits (246), Expect(3) = 0.0
Identities = 252/255 (98%)
Strand = Plus / Minus
Query: 1 accttcgtagagattgttaacgaatggatctacacctaaagaattcatccaattacggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 accttcgtagagattgttaacgaatggatctacacctaaagaattcatccaattacggaa 1194
Query: 61 agtcttttnttcacgagtctcttcaattntaacaacatcttcaactggttccaatgctgg 120
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1193 agtcttttcttcacgagtctcttcaattataacaacatcttcaactggttccaatgctgg 1134
Query: 121 atgagtattgaaaagattggcancgaatgctaaattaagtttttggaaaccagttacgat 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1133 atgagtattgaaaagattggcaacgaatgctaaattaagtttttggaaaccagttacgat 1074
Query: 181 atcctttggtttaaggaacttcttacaacctaatttatcggcattctctaaaactttaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 atcctttggtttaaggaacttcttacaacctaatttatcggcattctctaaaactttaac 1014
Query: 241 agcacgttgatctaa 255
|||||||||||||||
Sbjct: 1013 agcacgttgatctaa 999
Score = 143 bits (72), Expect(3) = 0.0
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 942 ccagcatcctttggtgcgatttgtttcaaaaggattgtatancattctgaatctttaata 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 967 ccagcatcctttggtgcgatttgtttcaaaaggattgtataacattctgaatctttaata 908
Query: 1002 tcaccagagaaattc 1016
|||||||||||||||
Sbjct: 907 tcaccagagaaattc 893
Score = 139 bits (70), Expect(3) = 0.0
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 1017 ctttactnttntttgtgagccagcagcggctaaatgataattgaaccatctcaataagat 1076
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ctttactcttctttgtgagccagcagcggctaaatgataattgaaccatctcaataagat 834
Query: 1077 ctcttcanntgnaagtttcaaataatnttcnatngtttgnccatcatgt 1125
||||||| || ||||||||| ||| ||| || |||| |||||||||
Sbjct: 833 ctcttcaactggaagtttcaataaatcttcaattgtttcaccatcatgt 785
Score = 44.1 bits (22), Expect(3) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 623 ttttgctgaattaatacaaagt 644
||||||||||||||||||||||
Sbjct: 635 ttttgctgaattaatacaaagt 614
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 19,708,892
Number of Sequences: 30356425
Number of extensions: 19708892
Number of successful extensions: 1374990
Number of sequences better than 10.0: 89
length of query: 1300
length of database: S,971,923,061
effective HSP length: 23
effective length of query: 1277
effective length of database: S,273,725,286
effective search space: 45044547190222
effective search space used: 45044547190222
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home