Homology FC-IC0254 vs Protein
Query= FC-IC0254 (FC-IC0254Q) /CSM/FC-IC/FC-IC0254Q.Seq.d/
(192 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 143 4e-33
FN357504_7(FN357504|pid:none) Schistosoma mansoni genome sequenc... 34 2.3
>AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA
mRNA, complete cds. &AB079606_1(AB079606|pid:none)
Length = 377
Score = 143 bits (360), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +1
Query: 1 TRDGQCPYNNYCGAKQGDNSGDLFCQSNFNKVQGDTCSVHGSSFVQLGSGFRYECAATLV 180
TRDGQCPYNNYCGAKQGDNSGDLFCQSNFNKVQGDTCSVHGSSFVQLGSGFRYECAATLV
Sbjct: 176 TRDGQCPYNNYCGAKQGDNSGDLFCQSNFNKVQGDTCSVHGSSFVQLGSGFRYECAATLV 235
Query: 181 CQAG 192
CQAG
Sbjct: 236 CQAG 239
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 530,324,706
Number of extensions: 9888672
Number of successful extensions: 16190
Number of sequences better than 10.0: 2
Number of HSP's gapped: 16186
Number of HSP's successfully gapped: 2
Length of query: 64
Length of database: 1,732,582,204
Length adjustment: 36
Effective length of query: 28
Effective length of database: 1,540,010,536
Effective search space: 43120295008
Effective search space used: 43120295008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
Dictyostelium discoideum cDNA Project Home