Homology FC-IC0228 vs DNA
Query= FC-IC0228 (FC-IC0228Q) /CSM/FC-IC/FC-IC0228Q.Seq.d/
(1573 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq;
ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
/db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
/db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; /db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/b/new_est_btra1.seq; est_cele1.seq; est_crei1.seq;
/db/DDBJNEW.DATA/b/new_est_crei1.seq; est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/b/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/b/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/b/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_stro1.seq;
/db/DDBJNEW.DATA/b/new_est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/b/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
/db/DDBJNEW.DATA/b/new_est_rest1.seq
30,679,270 sequences; T,251,742,201 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gen... 1546 0.0 4
CG110013|CG110013.1 PUIMI40TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.030 2
CC433814|CC433814.1 PUHOU87TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.043 2
CG111380|CG111380.1 PUFRH74TD ZM_0.6_1.0_KB Zea mays genomic... 38 0.044 2
AC068649|AC068649.18 Homo sapiens chromosome 12 clone RP11-3... 36 0.22 11
BW128099|BW128099.1 Ciona intestinalis cDNA, clone:rcign016n... 36 0.51 2
AC016406|AC016406.2 Homo sapiens clone RP11-45L18, LOW-PASS ... 36 0.88 7
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 ma... 36 1.0 14
AE006338|AE006338.1 Lactococcus lactis subsp. lactis IL1403 ... 42 1.3 3
AC116507|AC116507.3 Mus musculus clone RP24-309C17, WORKING ... 46 1.5 1
AP004598|AP004598.1 Oceanobacillus iheyensis HTE831 genomic ... 32 2.0 11
CC355080|CC355080.1 PUEEM88TD ZM_0.6_1.0_KB Zea mays genomic... 40 2.1 2
AC016059|AC016059.2 Homo sapiens chromosome 11 clone RP11-29... 38 2.3 2
AC021296|AC021296.2 Homo sapiens clone RP11-23F11, WORKING D... 34 2.5 9
AC133460|AC133460.1 Homo sapiens chromosome 11 clone CTD-202... 38 4.4 3
AC093534|AC093534.2 Homo sapiens chromosome 5 clone RP11-492... 34 4.7 9
AC134341|AC134341.2 Oryza sativa (japonica cultivar-group) c... 34 4.8 9
AC017095|AC017095.7 Homo sapiens BAC clone RP11-516C4 from 2... 44 5.8 1
AC115026|AC115026.3 Mus musculus clone RP24-238A19, WORKING ... 44 5.8 1
AC073665|AC073665.1 Mus musculus clone CT7-122J17, WORKING D... 44 5.8 1
AC145932|AC145932.2 Gallus gallus chromosome UNK clone CH261... 44 5.8 1
AC130380|AC130380.3 Homo sapiens chromosome 17 clone RP13-39... 36 7.5 4
BX247904|BX247904.4 Zebrafish DNA sequence *** SEQUENCING IN... 36 7.6 4
AC123976|AC123976.21 Medicago truncatula clone mth2-30j23, c... 34 8.3 7
AL139079|AL139079.2 Campylobacter jejuni subsp. jejuni NCTC ... 36 8.4 9
>AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene,
complete cds.
Length = 3457
Score = 1546 bits (780), Expect = 0.0
Identities = 783/784 (99%)
Strand = Plus / Plus
Query: 790 gtaccaattccaccagttatgccaccagcaggtaaagcaccatggattgatattattaca 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 gtaccaattccaccagttatgccaccagcaggtaaagcaccatggattgatattattaca 1324
Query: 850 agttcttatgataaagagatgagagaaccattaaatagtgaatcatttagtgatgttaaa 909
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1325 agttcttatgataaagagatgagagaaacattaaatagtgaatcatttagtgatgttaaa 1384
Query: 910 tttacattttttgaagagagaccagtttatgcacatcgtgttatattatgctcagcatct 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 tttacattttttgaagagagaccagtttatgcacatcgtgttatattatgctcagcatct 1444
Query: 970 gaattctttagaagggtatttggatacacattatcctctgaccaagctgagttcaaattg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 gaattctttagaagggtatttggatacacattatcctctgaccaagctgagttcaaattg 1504
Query: 1030 gatgatttaaatgagggtaaggttaaaaatattcgtagtgttacaattaaaccaaacgaa 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 gatgatttaaatgagggtaaggttaaaaatattcgtagtgttacaattaaaccaaacgaa 1564
Query: 1090 aagaatgatgacggcactaaatcaagtggtgaatttgtcgagatctcaatcgacagttca 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 aagaatgatgacggcactaaatcaagtggtgaatttgtcgagatctcaatcgacagttca 1624
Query: 1150 ataaatcgtcgtgttttcaatagattcattgagtttctttacactggtgtgttgaattac 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 ataaatcgtcgtgttttcaatagattcattgagtttctttacactggtgtgttgaattac 1684
Query: 1210 cttgataagaatgaccaacttcaagagacaattgcattggcagagagtgtcggcttcaag 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 cttgataagaatgaccaacttcaagagacaattgcattggcagagagtgtcggcttcaag 1744
Query: 1270 tatttagcaagtgcttgtaagaatgtgttgggtggtaatgaagatttgaatccatcgatt 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 tatttagcaagtgcttgtaagaatgtgttgggtggtaatgaagatttgaatccatcgatt 1804
Query: 1330 ggcactttcttaaatgaccaattgggtgaaactagtaaagagctattctttactaaaaag 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 ggcactttcttaaatgaccaattgggtgaaactagtaaagagctattctttactaaaaag 1864
Query: 1390 attctatctgatattcaattcatcgttgaaggcagatcaatttttgcacataaagcattg 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 attctatctgatattcaattcatcgttgaaggcagatcaatttttgcacataaagcattg 1924
Query: 1450 attttctcacgttcaaatgttgtaaatgcgctaattggtagaaatttcattgaaagagaa 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 attttctcacgttcaaatgttgtaaatgcgctaattggtagaaatttcattgaaagagaa 1984
Query: 1510 ggcaaggttgaaatgtctgatgatgtaacttttgattcattcatggcgattttagaatat 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 ggcaaggttgaaatgtctgatgatgtaacttttgattcattcatggcgattttagaatat 2044
Query: 1570 ttgt 1573
||||
Sbjct: 2045 ttgt 2048
Score = 1336 bits (674), Expect(4) = 0.0
Identities = 674/674 (100%)
Strand = Plus / Plus
Query: 1 accaattccaccagttatgccaccagcaggtaaagcaccatggattgatattattacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 accaattccaccagttatgccaccagcaggtaaagcaccatggattgatattattacaag 1326
Query: 61 ttcttatgataaagagatgagagaaacattaaatagtgaatcatttagtgatgttaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttcttatgataaagagatgagagaaacattaaatagtgaatcatttagtgatgttaaatt 1386
Query: 121 tacattttttgaagagagaccagtttatgcacatcgtgttatattatgctcagcatctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 tacattttttgaagagagaccagtttatgcacatcgtgttatattatgctcagcatctga 1446
Query: 181 attctttagaagggtatttggatacacattatcctctgaccaagctgagttcaaattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 attctttagaagggtatttggatacacattatcctctgaccaagctgagttcaaattgga 1506
Query: 241 tgatttaaatgagggtaaggttaaaaatattcgtagtgttacaattaaaccaaacgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 tgatttaaatgagggtaaggttaaaaatattcgtagtgttacaattaaaccaaacgaaaa 1566
Query: 301 gaatgatgacggcactaaatcaagtggtgaatttgtcgagatctcaatcgacagttcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 gaatgatgacggcactaaatcaagtggtgaatttgtcgagatctcaatcgacagttcaat 1626
Query: 361 aaatcgtcgtgttttcaatagattcattgagtttctttacactggtgtgttgaattacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 aaatcgtcgtgttttcaatagattcattgagtttctttacactggtgtgttgaattacct 1686
Query: 421 tgataagaatgaccaacttcaagagacaattgcattggcagagagtgtcggcttcaagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 tgataagaatgaccaacttcaagagacaattgcattggcagagagtgtcggcttcaagta 1746
Query: 481 tttagcaagtgcttgtaagaatgtgttgggtggtaatgaagatttgaatccatcgattgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 tttagcaagtgcttgtaagaatgtgttgggtggtaatgaagatttgaatccatcgattgg 1806
Query: 541 cactttcttaaatgaccaattgggtgaaactagtaaagagctattctttactaaaaagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 cactttcttaaatgaccaattgggtgaaactagtaaagagctattctttactaaaaagat 1866
Query: 601 tctatctgatattcaattcatcgttgaaggcagatcaatttttgcacataaagcattgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1867 tctatctgatattcaattcatcgttgaaggcagatcaatttttgcacataaagcattgat 1926
Query: 661 tttctcacgttcaa 674
||||||||||||||
Sbjct: 1927 tttctcacgttcaa 1940
Score = 85.7 bits (43), Expect(4) = 0.0
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 673 aatgttgtaaatgcgctnattggtagaaatttcattgaaagagaag 718
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1940 aatgttgtaaatgcgctaattggtagaaatttcattgaaagagaag 1985
Score = 60.0 bits (30), Expect(4) = 0.0
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 741 acttttgattcattcatggcgattttagaa 770
||||||||||||||||||||||||||||||
Sbjct: 2012 acttttgattcattcatggcgattttagaa 2041
Score = 32.2 bits (16), Expect(4) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 726 aatgtctgatgatgta 741
||||||||||||||||
Sbjct: 1996 aatgtctgatgatgta 2011
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 35,077,212
Number of Sequences: 30679270
Number of extensions: 35077212
Number of successful extensions: 2601857
Number of sequences better than 10.0: 51
length of query: 1573
length of database: T,251,742,201
effective HSP length: 23
effective length of query: 1550
effective length of database: S,546,118,991
effective search space: 55096484436050
effective search space used: 55096484436050
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home