Dictyostelium discoideum cDNA Clone CHR474

Sequence CHR474

ACACACATAT ACATCAAATA AACTATATAG GTTTAAACTT TTTATTTATT
TGTATAATAA TAAAATCATA ATAATCATAA TAATAATTAA TATAATATAT
CAATAATGAC AGAGTTTGAA GCAATTGTCC ATAAAGCTAC AAACTCTAAA
ATTACAGCGC CAAAAAGAAA ACATGTCAGA TCAATTGTTT TAGAATGTTA
TAATGAAAAT AGTGCAAGAA CATTTTATAT GGAATTATAT AGAAGACCAT
TAGATACTAG TGATGTTGTT TGTTGGAAAT CATTGATTAC AATTCATAAG
GTTGTACAAG AGGGACCAAA GAATGTATTA AGTGATACAA TTAGTAGAGT
TGGATGGTTT GAGAATTTGA GAGATCATTG GGCACGTTTT GATAATAGAG
GATTTGGTAG ATTGGTAGCA GACTATTGTA CATTAATCAT TGATAAAATA
CGTTTTCATC AAGCACATCC AGAATTTGAT GGTGGATTAT CCTTGGAGAA
CTATAGCAAG AATCATAGAC CCGAGTCAAT TGAAGTTGAC AAAGGTTTAC
AAACTGTAAA TCGTTTAATG GATTTAACTG ATGCTGTCTT TAGAATGCAT
AATTCAATCG TATCAGCAAC ACCTTATAAT GATTGTAAAA CTTCTGC---
-------GGT ATCAATAATT TGGATGCATT GGCTCAACAA GCTGACGCTG
AAAGAATTGA AGCCGAGAAG AAATATTTAG AGAATGGTTT TGATTTGGAT
GATGTTGCTG AACGTGAACT ATTGGCTGCC GCTAAAACCA TTGAAGATGC
TGCAAACTCA TTATTGGCCG CAAAATCAAA GAGAGCTCCA AAGAAGGAGG
GTGATTCACC AGATGTTGCT GAGGCAATCC TTGAGGCTGC TATGGCAATC
ACTGGTGCTA CTTCCACATT GGTTGGTGCC GCCACTTTAG CACAAAGAGA
ACGTGTCGAA AAGGGTAGAA CAAGTGATGG TGGTCCACTC TATAGAAAGG
ATCCAACTTG GGCTGAAGGT TTAATCTCTG CTGCAAAATC TGTTGCCCAA
GCCACTAAAG CTTTGGTAGA TAATGCCAAC AAGACAGCAT CTGGTCAAGA
GATCCCAGGT GGTACAGAAG AAGCTCTCAT TGCAACTTCG ATGGCTGTAA
CTGCTGCAAC TTCTCAATTG GTCTCTGCTT GTAAATCTAA ATCTGATATC
AATAGTCCTT CTCAACATAA ACTTTCAAAT GCTGCCAAAT CCGTATCCAA
TGCAACCAAT CTTTTAGTGG CTGCAGCCAA AGCTGTCGCT GCTAAAGTCG
CCTCTGAAGA GGATATCGAT TTCGATAAAC TCACTGTCAC TGGTTATAAA
GTTAAAGAAA TGGAACAACA AATGGCAATT CTCAGATTAG AAAAAGAATT
AGAAGTCGCT AGAAAAGGTT TAAGTGTTAT TAGAAAGAAA CAATA

Translated Amino Acid Sequence CHR474

thiyik*ti*v*tfylfv***nhnnhnnn*YNISIMTEFEAIVHKATNSKITAPKRKHVR
SIVLECYNENSARTFYMELYRRPLDTSDVVCWKSLITIHKVVQEGPKNVLSDTISRVGWF
ENLRDHWARFDNRGFGRLVADYCTLIIDKIRFHQAHPEFDGGLSLENYSKNHRPESIEVD
KGLQTVNRLMDLTDAVFRMHNSIVSATPYNDCKTS---

---GINNLDALAQQADAERIEAEKKYLENGFDLDDVAERELLAAAKTIEDAANSLLAAKS
KRAPKKEGDSPDVAEAILEAAMAITGATSTLVGAATLAQRERVEKGRTSDGGPLYRKDPT
WAEGLISAAKSVAQATKALVDNANKTASGQEIPGGTEEALIATSMAVTAATSQLVSACKS
KSDINSPSQHKLSNAAKSVSNATNLLVAAAKAVAAKVASEEDIDFDKLTVTGYKVKEMEQ
QMAILRLEKELEVARKGLSVIRKKQ

Homology CHR474 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CHR474 (CHR474Q) /CSM/CH/CHR4-D/CHR474Q.Seq.d/                       2593   0.0
SHK510 (SHK510Q) /CSM/SH/SHK5-A/SHK510Q.Seq.d/                       1562   0.0
SHA557 (SHA557Q) /CSM/SH/SHA5-C/SHA557Q.Seq.d/                       1562   0.0
SHA409 (SHA409Q) /CSM/SH/SHA4-A/SHA409Q.Seq.d/                       1562   0.0
CHS178 (CHS178Q) /CSM/CH/CHS1-D/CHS178Q.Seq.d/                       1562   0.0
CHR147 (CHR147Q) /CSM/CH/CHR1-B/CHR147Q.Seq.d/                       1562   0.0
CHN144 (CHN144Q) /CSM/CH/CHN1-B/CHN144Q.Seq.d/                       1562   0.0
CHI561 (CHI561Q) /CSM/CH/CHI5-C/CHI561Q.Seq.d/                       1562   0.0
SHL395 (SHL395Q) /CSM/SH/SHL3-D/SHL395Q.Seq.d/                       1560   0.0
VHQ296 (VHQ296Q) /CSM/VH/VHQ2-D/VHQ296Q.Seq.d/                       1554   0.0

Homology CHR474 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U14576|U14576.2 Dictyostelium discoideum filopodin (talA) ge...    56   0.001  3
BX572079|BX572079.7 Zebrafish DNA sequence from clone DKEY-3...    48   0.52   1
CP000040|CP000040.1 Bacillus cereus E33L plasmid pE33L466, c...    46   2.1    1
AL845327|AL845327.5 Mouse DNA sequence from clone RP23-213J9...    46   2.1    1
BX957276|BX957276.5 Zebrafish DNA sequence *** SEQUENCING IN...    34   3.6    2
BX957283|BX957283.7 Zebrafish DNA sequence *** SEQUENCING IN...    34   3.6    2
CR293523|CR293523.5 Zebrafish DNA sequence *** SEQUENCING IN...    34   3.7    2
CR847962|CR847962.3 Zebrafish DNA sequence *** SEQUENCING IN...    34   3.7    2
AC096351|AC096351.7 Rattus norvegicus clone CH230-24M6, WORK...    40   4.7    4
CR854927|CR854927.4 Zebrafish DNA sequence *** SEQUENCING IN...    36   6.1    9

Homology CHR474 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54K81) RecName: Full=Talin-B;                                       173   2e-41
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...   173   2e-41
A57036(A57036)talin - slime mold (Dictyostelium discoideum)           153   3e-35
FJ798800_1(FJ798800|pid:none) Microsporum gypseum strain ATCC 58...   145   7e-33
AE017345_306(AE017345|pid:none) Cryptococcus neoformans var. neo...   145   7e-33
FJ798795_1(FJ798795|pid:none) Microsporum gypseum strain ATCC 24...   144   1e-32
FJ798794_1(FJ798794|pid:none) Microsporum gypseum strain CBS 118...   144   1e-32
CP000290_297(CP000290|pid:none) Cryptococcus gattii WM276 chromo...   143   3e-32
EF107688_1(EF107688|pid:none) Emericella nidulans SlaB (slaB) ge...   140   1e-31
FQ311430_617(FQ311430|pid:none) Sporisorium reilianum SRZ2 chrom...   140   2e-31

Homology CHR474 vs Genome