Dictyostelium discoideum cDNA Clone CHO511

Sequence CHO511

ATTGGTAGTT GGTATTACAT CATTGAATGA TTTCAAGAAT CAAGCTAGAT
TTAGAGAATT AAATGACAAG AGTAACGATA AGGAAGTTAA AGGTATTCGT
GGTGGTGAAC AATGTCAAAT ATCAATATTC GATGTCAAGG TTGGTGATAT
TATCTCATTG GACACTGGTG ATATCATTTG TGCCGATGGT GTTTTCATTG
AAGGACATGC ATTGAAATGT GATGAATCAT CAATCACAGG TGAGAGTGAC
CCAATCAAGA AGGGTCAACC ACAAGACAAT ATGGACCCAT TCTTAATCTC
TGGTTCAATG GTAATCGAAG GTTTTGGTAC GATGTTAGTC ACAGCCGTTG
GTGTAAATTC ATTCAATGGT AAAACTATGA TGGGTCTCAG AGTGGCCTCT
GAAGACACAC CACTCCAAAT GAAATTATCC GTGTTGGCAA GTCGTATTGG
TTATTTCGGT ATGGGTGCTG CCATTCTCAT GTTGCTCATT GCAATTCCAA
AATATTTCAT TCAACGTAAA GTACATGACA TTGAAATCAC TCGTGAAGAT
GCTCAACCAA TTGTACAATT GGTGATTAGT GCTATCACTA TCGTTGTGGT
TGC------- ---TCCAATC ATAAAGAATG GTTTACATCA TTATACTTTG
GTTTTCAATT GTTTCGTTTT CCTTCAACTC TTTAATGAAA TCAATGCTCG
TGTACTCGGT AGTAGAACAA ATCCATTTAA AAACTTTTTC AATAACCCAA
TTTTCATTGC TGTCATGATC TTCACTTTGG GTGTTCAAAT CATTTTCGTT
ACATTTGGTG GTTCTGCAAC TTCAACCGAT TCTCTCTACA TTGTTGAATG
GATTTGTTGT GTTGTAGTTG GTGCCATCTC TTTACCAGTT GGTTTATTAT
TAAGAAAGAT TCCAATTCGT GAACCAGTTG TAAAGAATGA AATACCAGTT
CACTCTGAAG CTGTTTACAC TTCTCCATCT CCAAATCCTT CCTCTTCCAA
TTTATTAGGT AGTGGTGGTG CTAAACCAAT CTCAAAGGAT TATCCAACCT
CTGGTGAATC AACTCCACCA ATCAATGATG AAGGCTCACC ATTGGTCACA
AGAAAGACCT CTGTTGGTGC CAGTGCAAAT GATAATATCA ATACTCCAAT
CCCATCATCC TCATCAAATC TTGTAAATTT AAATAAACCA ACCCAAGTTG
GTAGAGGTTG GCAAATAGTA AGACAAACTC ATAAAAAATT GGTTGAATTA
ATGCTCTCAA AGAATTAGTC AAAATAAAGA ACCGGTCTTG TNATGTAGTT
CGGGTACAAA TAGAGGTTCT T

Translated Amino Acid Sequence CHO511

LVVGITSLNDFKNQARFRELNDKSNDKEVKGIRGGEQCQISIFDVKVGDIISLDTGDIIC
ADGVFIEGHALKCDESSITGESDPIKKGQPQDNMDPFLISGSMVIEGFGTMLVTAVGVNS
FNGKTMMGLRVASEDTPLQMKLSVLASRIGYFGMGAAILMLLIAIPKYFIQRKVHDIEIT
REDAQPIVQLVISAITIVVV---

---PIIKNGLHHYTLVFNCFVFLQLFNEINARVLGSRTNPFKNFFNNPIFIAVMIFTLGV
QIIFVTFGGSATSTDSLYIVEWICCVVVGAISLPVGLLLRKIPIREPVVKNEIPVHSEAV
YTSPSPNPSSSNLLGSGGAKPISKDYPTSGESTPPINDEGSPLVTRKTSVGASANDNINT
PIPSSSSNLVNLNKPTQVGRGWQIVRQTHKKLVELMLSKN*sk*rtglvm*fgyk*rf

Homology CHO511 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CHO511 (CHO511Q) /CSM/CH/CHO5-A/CHO511Q.Seq.d/                       2553   0.0
VFJ784 (VFJ784Q) /CSM/VF/VFJ7-D/VFJ784Q.Seq.d/                       1328   0.0
SHF533 (SHF533Q) /CSM/SH/SHF5-B/SHF533Q.Seq.d/                       1316   0.0
SHE405 (SHE405Q) /CSM/SH/SHE4-A/SHE405Q.Seq.d/                       1300   0.0
SHK225 (SHK225Q) /CSM/SH/SHK2-B/SHK225Q.Seq.d/                       1217   0.0
SHG728 (SHG728Q) /CSM/SH/SHG7-B/SHG728Q.Seq.d/                       1209   0.0
AHL803 (AHL803Q) /CSM/AH/AHL8-A/AHL803Q.Seq.d/                       1203   0.0
SHA370 (SHA370Q) /CSM/SH/SHA3-C/SHA370Q.Seq.d/                       1201   0.0
CHM263 (CHM263Q) /CSM/CH/CHM2-C/CHM263Q.Seq.d/                       1201   0.0
AHF114 (AHF114Q) /CSM/AH/AHF1-A/AHF114Q.Seq.d/                       1197   0.0

Homology CHO511 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


X89369|X89369.1 D.discoideum mRNA for PAT1 protein.              1253   0.0    4
X15380|X15380.1 Dictyostelium discoideum V4b gene.                 96   2e-15  1
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 ma...    36   0.035  13
AC111330|AC111330.4 Rattus norvegicus clone CH230-341F17, WO...    48   0.44   1
AC108736|AC108736.2 Homo sapiens chromosome 3 clone RP11-464...    34   0.55   9
AY939844|AY939844.1 Cyanophage P-SSM2, complete genome.            34   0.56   11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma...    32   0.60   15
CX804176|CX804176.2 JGI_CAAJ16498.rev NIH_XGC_tropBrn2 Xenop...    30   0.63   4
BX571856|BX571856.1 Staphylococcus aureus subsp. aureus stra...    34   0.72   30
CX798691|CX798691.2 JGI_CAAJ13422.rev NIH_XGC_tropBrn2 Xenop...    30   0.80   4

Homology CHO511 vs Protein

Sequences producing significant alignments:                      (bits) Value


S57726(S57726) PAT1 protein - slime mold (Dictyostelium discoide...   361   4e-98
CP003006_954(CP003006|pid:none) Myceliophthora thermophila ATCC ...   173   2e-41
CP003011_89(CP003011|pid:none) Thielavia terrestris NRRL 8126 ch...   170   1e-40
CU633865_19(CU633865|pid:none) Podospora anserina S mat+ genomic...   169   2e-40
AJ243516_1(AJ243516|pid:none) Neurospora crassa partial nca-3 ge...   166   4e-39
AM270165_71(AM270165|pid:none) Aspergillus niger contig An08c010...   161   9e-38
AP007155_536(AP007155|pid:none) Aspergillus oryzae RIB40 DNA, SC...   161   9e-38
AE017344_342(AE017344|pid:none) Cryptococcus neoformans var. neo...   159   3e-37
FQ790341_98(FQ790341|pid:none) Botryotinia fuckeliana isolate T4...   156   2e-36
FP929116_167(FP929116|pid:none) Leptosphaeria maculans JN3 lm_Su...   155   5e-36

Homology CHO511 vs Genome