Dictyostelium discoideum cDNA Clone CHI534

Sequence CHI534

ATTTTCAACT AATTTCCCAA CAATTAATAG AACTCTGAAA ATAAATAAGA
AATTAAAAAT GAAATTTTAT ATTGAAGATC TTTTAGTATA TTTTCCATAT
TCATATATTT ATCCAGAACA GTATAGTTAT ATGGTAGCAT TAAAGAGATC
ATTAGATAAT GGTGGACCAT GTATATTAGA GATGCCAAGT GGTACTGGTA
AGACGGTATC ATTGCTATCG TTAATTTCAT CATATCAAGT TAAAAATCCA
TCAATTAAAT TAATTTATTG TTCAAGAACA GTGCCAGAGA TTGAACAAGC
TACAGAAGAG GCTAGAAGGG TATTACAATA TAGGAATTCA GAAATGGGGG
AAGAGTCACC TAAAACGTTA TGTATGTCAA TGTCGTCACG TCGTAACCTT
TGTATTCAAC CAAGGGTATC GGAAGAGAGG GATGGTAAAG TGGTCGATGC
CCTCTGTAGA GAGTTGACAT CCTCATGGAA TAGGGAGTCA CCCACGAGTG
AAAAATGTAA ATTTTTCGAG AATTTTGAAT CTAACGGAAA GGAAATCCTA
CTAGAANGGG TGTATTCATT GGAAGATCTA AAAGAGTATG GATTAAAACA
TCAAATGTGT CCATACTTTT TA-------- --ATACAGCT GTCGTTAGAA
ATTATGGGGC ATTATTAGTT GAAGTCAGTG CTATAGTACC CGATGGAATC
ATTTGTTTTT CACTTCCTAT AGCTATATGG AGCAAATCGT ATCGGTTTGG
AATGAAATGG GTCTGTTAAA TAATATTCTA ACCAATAAGT TAATATTTGT
TGAAACTTCA GATCCTGCCG AATCAGCATT GGCATTGCAA AACTACAAGA
AAGCATGCGA CAGTGGTAGA GGTGCCGTAC TACTTTCAGT GGCAAGAGGT
AAGGTGTCTG AGGGTATCGA TTTCGATAAT CAGTATGGCA GATGCGTCAT
TCTCTATGGC ATACCTTACA TCAATACCGA GAGTAAGGTA TTACGTGCAC
GTTTGGAATT CCTTAGAGAT CGTTATCAAA TTAGAGAGAA TGAATTCCTA
ACTTTTGATG CAATGAGAAC TGCTTCTCAA TGTGTTGGTA GAGTCATTCG
TGGTAAATCC GATTATGGTA TCACGATCTT TGCTGATAAA CGTTACAATC
GTTTAGATAA ACGTAATAAA TTACCACAAT GGATCTTACA ATTTTGTCAA
CCTCAACATT TAAATCTTTC AACTGATATG GCAATTTCAC TTTCAAAAAC
TTTTTTAAGA GAAATGGGTC AACCATTTTC AAGAGAAGAA CAATTAGGTA
AATCATTATG GAGTTTAGAA CATGTTGAAA AACAATCAAC AAGTAAACCA
CCACAACAAC AAAATTCAGC TATAAATTCA ACTATTACAA CTTCTACTAC
TACTACAACC ACGACTTCTA CAATTTNCNA AACACATTTA ACA

Translated Amino Acid Sequence CHI534

FSTNFPTINRTLKINKKLKMKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILE
MPSGTGKTVSLLSLISSYQVKNPSIKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESP
KTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSWNRESPTSEKCKFFENFESNGK
EILLEXVYSLEDLKEYGLKHQMCPYFL---

---TAVVRNYGALLVEVSAIVPDGIICFSLPIAIWSKSYRFGMKWVC*iif*pis*yllk
lqilpnqhwhckttrkhatvvevpyyfqwqevrclrvsisiismadasfsmayltsiprv
ryyvhvwnsleiviklermns*llmq*elllnvlvesfvvnpimvsrsllinvtiv*inv
inyhngsynfvnlni*ifqliwqfhfqklf*ekwvnhfqeknn*vnhygv*nmlknnqqv
nhhnnkiql*iqllqlllllqprllqfxkhi*

Homology CHI534 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CHI534 (CHI534Q) /CSM/CH/CHI5-B/CHI534Q.Seq.d/                       2783   0.0
VHB116 (VHB116Q) /CSM/VH/VHB1-A/VHB116Q.Seq.d/                       1572   0.0
AHK619 (AHK619Q) /CSM/AH/AHK6-A/AHK619Q.Seq.d/                       1542   0.0
VHC393 (VHC393Q) /CSM/VH/VHC3-D/VHC393Q.Seq.d/                       1524   0.0
AHF812 (AHF812Q) /CSM/AH/AHF8-A/AHF812Q.Seq.d/                       1487   0.0
VHN209 (VHN209Q) /CSM/VH/VHN2-A/VHN209Q.Seq.d/                       1455   0.0
VHA271 (VHA271Q) /CSM/VH/VHA2-C/VHA271Q.Seq.d/                       1431   0.0
CHF863 (CHF863Q) /CSM/CH/CHF8-C/CHF863Q.Seq.d/                       1431   0.0
AFD323 (AFD323Q) /CSM/AF/AFD3-A/AFD323Q.Seq.d/                       1425   0.0
AFM169 (AFM169Q) /CSM/AF/AFM1-C/AFM169Q.Seq.d/                       1419   0.0

Homology CHI534 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U77066|U77066.1 Dictyostelium discoideum DNA helicase homolo...  1435   0.0    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    38   3e-09  25
CR382139|CR382139.1 Debaryomyces hansenii chromosome G of st...    66   2e-06  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    38   2e-06  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma...    36   3e-05  16
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 ma...    34   9e-05  11
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 ma...    34   1e-04  16
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 ma...    34   3e-04  14
CF638930|CF638930.1 D08_G08 Filamentous Forced Diploid Ustil...    58   4e-04  1
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 ma...    34   7e-04  18

Homology CHI534 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q55G81) RecName: Full=TFIIH basal transcription factor complex ...   448   e-133
AY092780_1(AY092780|pid:none) Homo sapiens excision repair cross...   282   8e-80
U97572_1(U97572|pid:none) Mus musculus DNA helicase (XPD/ERCC2) ...   281   1e-79
(O08811) RecName: Full=TFIIH basal transcription factor complex ...   281   2e-79
AK004652_1(AK004652|pid:none) Mus musculus adult male lung cDNA,...   281   2e-79
BC110523_1(BC110523|pid:none) Homo sapiens excision repair cross...   280   2e-79
BC110522_1(BC110522|pid:none) Homo sapiens excision repair cross...   280   2e-79
AK130849_1(AK130849|pid:none) Homo sapiens cDNA FLJ27339 fis, cl...   280   2e-79
AB170535_1(AB170535|pid:none) Macaca fascicularis brain cDNA clo...   280   2e-79
I51720(I51720;A56748) probable DNA helicase ERCC2/XPD - southern...   280   3e-79

Homology CHI534 vs Genome