Dictyostelium discoideum cDNA Clone CHC609

Sequence CHC609

CGTAGAAAAA GATCAAAAAG ACCAACAACA TTAGGAGAAT CAAATAAAGA
TGGTGAAACA GCCAATTCAG TATCGATTTC AGCAGGTACA TCAAAATCAA
ACATTTCATC ACCATTAGTT GATGGTGCTG ACATTTTATC AAAACCAAAT
AGTAGCCCAA CAAGTAGTAG TTTAAGTGGT AGTAATAGTG CAAATGGTTT
CTTATCAGAT GATGATGATT TATTATTAAA TGGTAATGAG CAATTAAATG
AAAACCACAA TACTAATTCA ACCAATGGTG CTACCAATAA TAACAACAAC
AATAACAACA ACAGTGGCAG CAATAGTCCA TCACATCAAC AATCATCAGA
ATTACCATTA TTAAATTTAT TTCAAAAGTT TTTAAATAGA GAAGCAATTA
AAGTTTTACA ACAAAGACAT TCAGCAATTA ATAATAGATT ACAAAGATTA
AAGAAAGTAG TTGATCCAAA GAAATTACGT GAAAGAGGTA AAATCTTAAA
AAATGAAAAA GAGAAAATTA AGTCATTAAT TAAATTAAAG AAAGTTCAAT
TAGATGATCA TATGAATGCG C--------- -ATTGGTATT TGCANTAAGT
AATGGTCCAT TGGCATGGGG TACAATCGTA TGGAGAAATA GTTTAGTATT
CCATGATGTT GACAAGTTGA CATCGGTTTT CATTCATCTT TGTCCACCAA
TTGTAACCTA TTGTTTGCGT TGGTTCCCAA ACGTTTATCC AGAGCAATTG
GCATGTGGTG GTGTAGAGTG TGTTTTATCN TTTAAAGAGA TTTTCTTTGT
TCCATTCATG GTGTATGCAT TTTGGCAAGT CTTTTACTAC ATTAAAACTG
AGGTGGTCGA TAGTGACAAA TTAGCCAATG ACAAGGAAAT AATGACCTCT
TCAAGATGGA TGTCTGTAAA ACAACCCCAC CCAATCTATA GATGGTGTCA
AAAGAATGGT TACAACGTTA GTCCTGTGGT TATTTTAATT TTAGTTCAAA
TGCTTTACAC TTTGGCCACT TGTATCTCTT TACCTTTCTT AATTCAATCA
TTTTGGTTAC ACACTGTCTT TATGATTTAC ATCTTTGTCA CAATCTCTTG
GAATGGTGCC TCTTATTATT TCGAAGTTTT CTCTGAAAAC TATAGTTCAC
GTTTAAATAG TGAATTCAAA CATAAACACA ACAAAGATCA ACCTTTAAAA
ATTACTTCAA TCAAAGCTTT CTTAAAATTT TTAGC

Translated Amino Acid Sequence CHC609

RRKRSKRPTTLGESNKDGETANSVSISAGTSKSNISSPLVDGADILSKPNSSPTSSSLSG
SNSANGFLSDDDDLLLNGNEQLNENHNTNSTNGATNNNNNNNNNSGSNSPSHQQSSELPL
LNLFQKFLNREAIKVLQQRHSAINNRLQRLKKVVDPKKLRERGKILKNEKEKIKSLIKLK
KVQLDDHMNA---

---LVFAXSNGPLAWGTIVWRNSLVFHDVDKLTSVFIHLCPPIVTYCLRWFPNVYPEQLA
CGGVECVLSFKEIFFVPFMVYAFWQVFYYIKTEVVDSDKLANDKEIMTSSRWMSVKQPHP
IYRWCQKNGYNVSPVVILILVQMLYTLATCISLPFLIQSFWLHTVFMIYIFVTISWNGAS
YYFEVFSENYSSRLNSEFKHKHNKDQPLKITSIKAFLKFL

Homology CHC609 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


CHC609 (CHC609Q) /CSM/CH/CHC6-A/CHC609Q.Seq.d/                       1352   0.0
SSE723 (SSE723Q) /CSM/SS/SSE7-A/SSE723Q.Seq.d/                       1213   0.0
SFL335 (SFL335Q) /CSM/SF/SFL3-B/SFL335Q.Seq.d/                       1100   0.0
VHO523 (VHO523Q) /CSM/VH/VHO5-A/VHO523Q.Seq.d/                       1063   0.0
VFE430 (VFE430Q) /CSM/VF/VFE4-B/VFE430Q.Seq.d/                       1041   0.0
CHM318 (CHM318Q) /CSM/CH/CHM3-A/CHM318Q.Seq.d/                       1035   0.0
SLD316 (SLD316Q) /CSM/SL/SLD3-A/SLD316Q.Seq.d/                       1033   0.0
CHG164 (CHG164Q) /CSM/CH/CHG1-C/CHG164Q.Seq.d/                       1025   0.0
CFI691 (CFI691Q) /CSM/CF/CFI6-D/CFI691Q.Seq.d/                       1019   0.0
VFL837 (VFL837Q) /CSM/VF/VFL8-B/VFL837Q.Seq.d/                        999   0.0

Homology CHC609 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 ma...    36   2e-06  24
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, comp...    36   2e-04  25
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 ma...    34   3e-04  15
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 ma...    38   4e-04  10
AP004170|AP004170.1 Mycoplasma penetrans HF-2 DNA, complete ...    34   5e-04  16
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   5e-04  25
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 ma...    40   8e-04  15
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 ma...    32   0.001  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...    34   0.002  19
AP004172|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete ...    34   0.005  14

Homology CHC609 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000583_96(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   129   3e-28
CR954203_94(CR954203|pid:none) Ostreococcus tauri strain OTTH059...   127   8e-28
EU958991_1(EU958991|pid:none) Zea mays clone 208647 unknown mRNA.     119   2e-25
BT033317_1(BT033317|pid:none) Zea mays full-length cDNA clone ZM...   115   2e-24
AK069774_1(AK069774|pid:none) Oryza sativa Japonica Group cDNA c...   114   5e-24
EF147277_1(EF147277|pid:none) Populus trichocarpa clone WS0122_C...   113   1e-23
AM451482_4(AM451482|pid:none) Vitis vinifera contig VV78X165379....   113   1e-23
AB015477_4(AB015477|pid:none) Arabidopsis thaliana genomic DNA, ...   110   1e-22
(O94673) RecName: Full=Uncharacterized membrane protein C776.05;...   102   2e-20
FM992688_968(FM992688|pid:none) Candida dubliniensis CD36 chromo...    91   8e-17

Homology CHC609 vs Genome